Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bioinformatics/btaa201

https://doi.org/10.1093/bioinformatics/btaa201

Cited by: 37
Author(s): Meenakshi Venkatasubramanian, Kashish Chetal, Daniel Schnell, Gowtham Atluri, Nathan Salomonis
Published: about 4 years ago

Software Mentions 10

bioconductor: SC3

Single-Cell Consensus Clustering
Papers that mentioned: 71

bioconductor: scMerge

scMerge: Merging multiple batches of scRNA-seq data
Papers that mentioned: 8

cran: CCA

Canonical Correlation Analysis
Papers that mentioned: 449

cran: conos

Clustering on Network of Samples
Papers that mentioned: 1

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

pypi: AltAnalyze

User Friendly Application for Comprehensive Transcriptome Analysis
Papers that mentioned: 102

pypi: Harmony

Harmony Programming Language
Papers that mentioned: 504

pypi: networkx

Python package for creating and manipulating graphs and networks
Papers that mentioned: 110

pypi: nimfa

A Python module for nonnegative matrix factorization
Papers that mentioned: 3

pypi: scikit-learn

A set of python modules for machine learning and data mining
Papers that mentioned: 2,431