Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bioinformatics/btaa201

https://doi.org/10.1093/bioinformatics/btaa201

Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF

Cited by: 37
Author(s): Meenakshi Venkatasubramanian, Kashish Chetal, Daniel Schnell, Gowtham Atluri, Nathan Salomonis
Published: over 4 years ago

Software Mentions 10

bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
bioconductor: scMerge
scMerge: Merging multiple batches of scRNA-seq data
Papers that mentioned: 8
cran: CCA
Canonical Correlation Analysis
Papers that mentioned: 449
cran: conos
Clustering on Network of Samples
Papers that mentioned: 1
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: AltAnalyze
User Friendly Application for Comprehensive Transcriptome Analysis
Papers that mentioned: 102
pypi: Harmony
Harmony Programming Language
Papers that mentioned: 504
pypi: networkx
Python package for creating and manipulating graphs and networks
Papers that mentioned: 110
pypi: nimfa
A Python module for nonnegative matrix factorization
Papers that mentioned: 3
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431