Projects: bioconductor: scMerge
https://packages.ecosyste.ms/registries/bioconductor.org/packages/scMerge
scMerge: Merging multiple batches of scRNA-seq data
1 version
Latest release: almost 2 years ago
2 dependent packages
17,659 downloads total
Enhanced Analysis
Repository Activity:
Repository Owner:
Sydney Precision Bioinformatics (organization)
SPB alliance brings together multiple research groups and junior and senior researchers with shared interests in bioinformatics and computational sciences. Academic
SPB alliance brings together multiple research groups and junior and senior researchers with shared interests in bioinformatics and computational sciences. Academic
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+8
Academic maintainer emails
1 maintainers with academic email addresses -
+80
Educational commit emails
4 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+10
Educational website
Repository owner has educational domain website -
+6
Science terms in README
3 scientific terms found in README -
+10
DOI references
1 DOI references found in README
Penalties:
-
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning scMerge 8
10.20517/jtgg.2020.51
Toward uncharted territory of cellular heterogeneity: advances and applications of single-cell RNA-seqCited by: 2
Author(s): Brandon Lieberman, Meena Kusi, Chia-Nung Hung, Chih-Wei Chou, Ning He, Yen‐Yi Ho, Josephine A. Taverna, Tim Hui-Ming Huang, Chun-Liang Chen
Software Mentions: 18
Published: over 5 years ago
10.1186/s13059-019-1766-4
scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq dataCited by: 74
Author(s): Nelson Johansen, Gerald Quon
Software Mentions: 12
Published: almost 6 years ago
10.3389/fonc.2020.00973
Impact of Data Preprocessing on Integrative Matrix Factorization of Single Cell DataCited by: 8
Author(s): Lauren Hsu, Aedín C. Culhane
Software Mentions: 10
Published: about 5 years ago
10.1093/bioinformatics/btaa201
Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMFCited by: 37
Author(s): Meenakshi Venkatasubramanian, Kashish Chetal, Daniel Schnell, Gowtham Atluri, Nathan Salomonis
Software Mentions: 10
Published: over 5 years ago
10.1186/s13046-021-01955-1
What are the applications of single-cell RNA sequencing in cancer research: a systematic reviewCited by: 28
Author(s): Lvyuan Li, Fang Xiong, Yumin Wang, Shanshan Zhang, Zhaojian Gong, Xiayu Li, Yi He, Lei Shi, Fuyan Wang, Qianjin Liao, Bo Xiang, Ming Zhou, Xiaoling Li, Yong Li, Guiyuan Li, Zhaoyang Zeng, Wei Xiong, Can Guo
Software Mentions: 9
Published: about 4 years ago
10.3389/fonc.2020.01254
Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric TechnologiesCited by: 39
Author(s): Natasja L. de Vries, Ahmed Mahfouz, Frits Koning, Noel F.C.C. de Miranda
Software Mentions: 8
Published: about 5 years ago
10.1186/s13059-019-1850-9
A benchmark of batch-effect correction methods for single-cell RNA sequencing dataCited by: 506
Author(s): Hoa Tran, Kok Siong Ang, Marion Chevrier, Xiaomeng Zhang, Nicole Yee Shin Lee, Michelle Goh, Jinmiao Chen
Software Mentions: 6
Published: over 5 years ago
10.3389/fgene.2021.708981
deepMNN: Deep Learning-Based Single-Cell RNA Sequencing Data Batch Correction Using Mutual Nearest NeighborsCited by: 10
Author(s): Bin Zou, Tongda Zhang, Ruilong Zhou, Xiaoying Jiang, Huanming Yang, Xin Jin, Yong Bai
Software Mentions: 3
Published: almost 4 years ago