Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: scMerge

https://packages.ecosyste.ms/registries/bioconductor.org/packages/scMerge

scMerge: Merging multiple batches of scRNA-seq data
1 version
Latest release: about 1 year ago
2 dependent packages
17,659 downloads total

Papers Mentioning scMerge 8

10.20517/jtgg.2020.51

Toward uncharted territory of cellular heterogeneity: advances and applications of single-cell RNA-seq
Cited by: 2
Author(s): Brandon Lieberman, Meena Kusi, Chia-Nung Hung, Chih-Wei Chou, Ning He, Yen‐Yi Ho, Josephine A. Taverna, Tim Hui-Ming Huang, Chun-Liang Chen
Software Mentions: 18
Published: almost 5 years ago

10.1186/s13059-019-1766-4

scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq data
Cited by: 74
Author(s): Nelson Johansen, Gerald Quon
Software Mentions: 12
Published: over 5 years ago

10.3389/fonc.2020.00973

Impact of Data Preprocessing on Integrative Matrix Factorization of Single Cell Data
Cited by: 8
Author(s): Lauren Hsu, Aedín C. Culhane
Software Mentions: 10
Published: over 4 years ago

10.1093/bioinformatics/btaa201

Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF
Cited by: 37
Author(s): Meenakshi Venkatasubramanian, Kashish Chetal, Daniel Schnell, Gowtham Atluri, Nathan Salomonis
Software Mentions: 10
Published: over 4 years ago

10.1186/s13046-021-01955-1

What are the applications of single-cell RNA sequencing in cancer research: a systematic review
Cited by: 28
Author(s): Lvyuan Li, Fang Xiong, Yumin Wang, Shanshan Zhang, Zhaojian Gong, Xiayu Li, Yi He, Lei Shi, Fuyan Wang, Qianjin Liao, Bo Xiang, Ming Zhou, Xiaoling Li, Yong Li, Guiyuan Li, Zhaoyang Zeng, Wei Xiong, Can Guo
Software Mentions: 9
Published: over 3 years ago

10.3389/fonc.2020.01254

Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric Technologies
Cited by: 39
Author(s): Natasja L. de Vries, Ahmed Mahfouz, Frits Koning, Noel F.C.C. de Miranda
Software Mentions: 8
Published: over 4 years ago

10.1186/s13059-019-1850-9

A benchmark of batch-effect correction methods for single-cell RNA sequencing data
Cited by: 506
Author(s): Hoa Tran, Kok Siong Ang, Marion Chevrier, Xiaomeng Zhang, Nicole Yee Shin Lee, Michelle Goh, Jinmiao Chen
Software Mentions: 6
Published: almost 5 years ago

10.3389/fgene.2021.708981

deepMNN: Deep Learning-Based Single-Cell RNA Sequencing Data Batch Correction Using Mutual Nearest Neighbors
Cited by: 10
Author(s): Bin Zou, Tongda Zhang, Ruilong Zhou, Xiaoying Jiang, Huanming Yang, Xin Jin, Yong Bai
Software Mentions: 3
Published: over 3 years ago