Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13321-020-00455-2

https://doi.org/10.1186/s13321-020-00455-2

spyrmsd: symmetry-corrected RMSD calculations in Python

Cited by: 23
Author(s): Rocco Meli, Philip C. Biggin
Published: over 4 years ago

Software Mentions 13

bioconductor: graph
graph: A package to handle graph data structures
Papers that mentioned: 45
pypi: conda
OS-agnostic, system-level binary package manager.
Papers that mentioned: 92
pypi: graph
Directed and undirected graph data structures and algorithms.
Papers that mentioned: 45
pypi: graph-tool
An efficient python module for manipulation and statistical analysis of graphs.
Papers that mentioned: 5
pypi: mypy
Optional static typing for Python
Papers that mentioned: 1
pypi: networkx
Python package for creating and manipulating graphs and networks
Papers that mentioned: 110
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: pip
The PyPA recommended tool for installing Python packages.
Papers that mentioned: 21
pypi: pybel
Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)
Papers that mentioned: 7
pypi: pytest
pytest: simple powerful testing with Python
Papers that mentioned: 16
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
pypi: spyrmsd
Python RMSD tool with symmetry correction.
Papers that mentioned: 1
pypi: tool
A compact modular conf/web/console framework.
Papers that mentioned: 293