Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: pytest

https://packages.ecosyste.ms/registries/pypi.org/packages/pytest

pytest: simple powerful testing with Python
165 versions
Latest release: about 1 year ago
17,685 dependent packages
96,030,877 downloads last month

Papers Mentioning pytest 16

10.1186/s13321-020-00455-2

spyrmsd: symmetry-corrected RMSD calculations in Python
Cited by: 23
Author(s): Rocco Meli, Philip C. Biggin
Software Mentions: 13
Published: over 4 years ago

A Python library for FAIRer access and deposition to the Metabolomics Workbench Data Repository
Cited by: 8
Author(s): Andrey Smelter, Hunter N. B. Moseley
Software Mentions: 9
Published: over 6 years ago

10.3389/fninf.2018.00016

Experimental Directory Structure (Exdir): An Alternative to HDF5 Without Introducing a New File Format
Cited by: 14
Author(s): Svenn-Arne Dragly, Milad Hobbi Mobarhan, Mikkel Elle Lepperød, Simen Tennøe, Marianne Fyhn, Torkel Hafting, Anders Malthe‐Sørenssen
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pcbi.1008551

DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles
Cited by: 39
Author(s): Giulio Tesei, João M. Martins, Micha B. A. Kunze, Yong Wang, Ramón Crehuet, Kresten Lindorff‐Larsen
Software Mentions: 7
Published: almost 4 years ago

10.1186/s13321-021-00536-w

Learning protein-ligand binding affinity with atomic environment vectors
Cited by: 21
Author(s): Rocco Meli, Andrew Anighoro, Michael J. Bodkin, Garrett M. Morris, Philip C. Biggin
Software Mentions: 6
Published: over 3 years ago

10.7717/peerj.6562

Lightweight data management with dtool
Cited by: 4
Author(s): Tjelvar S. G. Olsson, Matthew Hartley
Software Mentions: 5
Published: almost 6 years ago

10.3758/s13428-018-01193-y

PsychoPy2: Experiments in behavior made easy
Cited by: 1,852
Author(s): Jonathan W. Peirce, Jeremy Gray, Sol Simpson, Michael R. MacAskill, Richard Höchenberger, Hiroyuki Sogo, Erik K. Kastman, Jonas Kristoffer Lindeløv
Software Mentions: 4
Published: almost 6 years ago

10.3389/fnins.2015.00380

Benchmarking neuromorphic systems with Nengo
Cited by: 0
Author(s): Trevor Bekolay, Terrence C. Stewart, Chris Eliasmith
Software Mentions: 4
Published: about 9 years ago

10.1200/CCI.19.00127

CIViCpy: A Python Software Development and Analysis Toolkit for the CIViC Knowledgebase
Cited by: 10
Author(s): Alex H. Wagner, Susanna Kiwala, Adam Coffman, Joshua F. McMichael, Kelsy C. Cotto, T. Brian Mooney, Erica K. Barnell, Kilannin Krysiak, Arpad Danos, Jason Walker, Obi L. Griffith
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pcbi.1009146

OpenABM-Covid19—An agent-based model for non-pharmaceutical interventions against COVID-19 including contact tracing
Cited by: 94
Author(s): Robert Hinch, William J. M. Probert, Anel Nurtay, Michaela Kendall, Chris Wymant, Matthew Hall, Katrina A. Lythgoe, Ana Bulas Cruz, Lele Zhao, Andrea Stewart, Luca Ferretti, Daniel Montero, James R. Warren, Nicole Mather, Matthew Abueg, Neo Wu, Olivier Legat, Katie Bentley, Thomas Mead, Kelvin Van-Vuuren, Dylan Feldner-Busztin, Tommaso Ristori, Anthony Finkelstein, David Bonsall, Lucie Abeler-Dörner, Christophe Fraser
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pcbi.1009301

PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial
Cited by: 4
Author(s): Michael Pickles, Anne Cori, William J. M. Probert, Rafael Sauter, Robert Hinch, Sarah Fidler, Helen Ayles, Peter Böck, Deborah Donnell, Ethan Wilson, Estelle Piwowar‐Manning, Sian Floyd, Richard Hayes, Christophe Fraser, Hptn Study Team
Software Mentions: 3
Published: over 3 years ago

10.1093/gigascience/giaa133

Fractional ridge regression: a fast, interpretable reparameterization of ridge regression
Cited by: 22
Author(s): Ariel Rokem, Kendrick Kay
Software Mentions: 3
Published: about 4 years ago

10.3390/s19204455

A Role-Based Access Control Model in Modbus SCADA Systems. A Centralized Model Approach
Cited by: 28
Author(s): Santiago Figueroa-Lorenzo, Javier Añorga, Saioa Arrizabalaga
Software Mentions: 2
Published: about 5 years ago

10.3389/fnhum.2021.675433

Diffusional Kurtosis Imaging in the Diffusion Imaging in Python Project
Cited by: 19
Author(s): Rafael Neto Henriques, Marta Correia, Maurizio Marrale, Elizabeth Huber, John Kruper, Serge Koudoro, Jason D. Yeatman, Eleftherios Garyfallidis, Ariel Rokem
Software Mentions: 2
Published: over 3 years ago

10.1038/s41597-020-0445-3

A global database of Holocene paleotemperature records
Cited by: 93
Author(s): Darrell S. Kaufman, Nicholas P. McKay, Cody Routson, Michael P. Erb, Basil Davis, Oliver Heiri, Samuel L. Jaccard, Jessica E. Tierney, Christoph Dätwyler, Yarrow Axford, Thomas Van Brussel, Olivier Cartapanis, Brian M. Chase, Andria Dawson, Anne de Vernal, Stefan Engels, Lukas Jonkers, Jeremiah Marsicek, Paola Moffa-Sánchez, C. Morrill, Anaïs Orsi, Kira Rehfeld, Krystyna M. Saunders, Philipp S. Sommer, Elizabeth K. Thomas, Marcela Sandra Tonello, Mónika Tóth, Richard S. Vachula, Andrei A. Andreev, Sébastien Bertrand, Boris K. Biskaborn, Manuel Bringué, Stephen J. Brooks, Magaly Caniupán, Manuel Chevalier, Les C. Cwynar, Julien Emile‐Geay, John M. Fegyveresi, Angelica Feurdean, Walter Finsinger, M.‐C. Fortin, Louise Foster, Mathew Fox, Konrad Gajewski, Martín Grosjean, Sonja Hausmann, Markus Heinrichs, Naomi Holmes, Boris P. Ilyashuk, Elena A. Ilyashuk, Steve Juggins, Deborah Khider, Karin A. Koinig, Peter G. Langdon, Isabelle Larocque‐Tobler, Jianyong Li, André F. Lotter, Tomi P. Luoto, Anson W. Mackay, Enikő Magyari, S. B. Malevich, Bryan G. Mark, Julieta Massaferro, Vincent Montade, Larisa Nazarova, Elena Novenko, Petr Pařil, Emma J. Pearson, Matthew Peros, Reinhard Pienitz, Mateusz Płóciennik, David F. Porinchu, Aaron P. Potito, Andrew Rees, Scott A. Reinemann, Roberts Sj, Nicolas Rolland, J. Sakari Salonen, Angela Self, Heikki Seppä, Shyhrete Shala, Jeannine Marie St-Jacques, Barbara Stenni, Liudmila Syrykh, Pol Tarrats, Karen Taylor, Valerie van den Bos, Gaute Velle, Eugene R. Wahl, Ian R. Walker, Janet M. Wilmshurst, Enlou Zhang, Snezhana Zhilich
Software Mentions: 1
Published: over 4 years ago

10.5195/jmla.2021.1105

Updating search strategies for literature reviews with OUR2D2: an open-source computer application
Cited by: 1
Author(s): Abby M. Lohr, Noah Van Gorden, Deborah Jean McClelland, Ellen Dubinsky, Lynn B. Gerald, Ada M. Wilkinson-Lee, Scott C. Carvajal
Software Mentions: 1
Published: over 3 years ago