Ecosyste.ms: Papers

10.1186/s13321-020-00455-2

spyrmsd: symmetry-corrected RMSD calculations in Python
Cited by: 23
Author(s): Rocco Meli, Philip C. Biggin
Software Mentions: 13
Published: over 3 years ago

10.20900/immunometab20210022

Meta-Analysis of Smooth Muscle Lineage Transcriptomes in Atherosclerosis and Their Relationships to In Vitro Models
Cited by: 21
Author(s): Austin C. Conklin, Hitoo Nishi, Florencia Schlamp, Tiit Örd, Kadri Õunap, Minna U. Kaikkonen, Edward A. Fisher, Casey E. Romanoski
Software Mentions: 9
Published: almost 3 years ago

10.3390/metabo11030133

Correlation of Metabolic Profiles of Plasma and Cerebrospinal Fluid of High-Grade Glioma Patients
Cited by: 9
Author(s): Artem D. Rogachev, Н. А. Алемасов, В. А. Иванисенко, Nikita V. Ivanisenko, E. V. Gaisler, Olga Oleshko, С. В. Чересиз, С. В. Мишинов, В. В. Ступак, Andrey G. Pokrovsky
Software Mentions: 9
Published: about 3 years ago

10.1371/journal.pone.0069624

Transcriptomic Analysis of Insulin-Sensitive Tissues from Anti-Diabetic Drug Treated ZDF Rats, a T2DM Animal Model
Cited by: 4
Author(s): Yo Na Kim, Sangok Kim, Il Yong Kim, Jae Hoon Shin, Sooyoung Cho, Sun Shin Yi, Wankyu Kim, Kyung Sub Kim, Sanghyuk Lee, Je Kyung Seong
Software Mentions: 8
Published: almost 11 years ago

10.1093/bioinformatics/btx738

PlanNET: homology-based predicted interactome for multiple planarian transcriptomes
Cited by: 17
Author(s): Sergio Castillo-Lara, Josep F. Abril
Software Mentions: 8
Published: over 6 years ago

10.1186/s13058-016-0758-5

Patient survival and tumor characteristics associated with CHEK2:p.I157T – findings from the Breast Cancer Association Consortium
Cited by: 37
Author(s): Taru Muranen, Carl Blomqvist, Thilo Dörk, Anna Jakubowska, Päivi Heikkilä, Rainer Fagerholm, Dario Greco, Kristiina Aittomäki, Stig E. Bojesen, Mitul Shah, Alison M. Dunning, Valerie Rhenius, Per Hall, Kamila Czene, Judith S. Brand, Hatef Darabi, Jenny Chang–Claude, Anja Rudolph, Børge G. Nordestgaard, Fergus J. Couch, Steven N. Hart, Jonine D. Figueroa, Montserrat García‐Closas, Peter A. Fasching, Matthias W. Beckmann, Jingmei Li, Jing Liu, Irene L. Andrulis, Robert Winqvist, Katri Pylkäs, Arto Mannermaa, Vesa Kataja, Annika Lindblom, Sara Margolin, Jan Lubiński, Natalia Dubrowinskaja, Manjeet K. Bolla, Joe Dennis, Kyriaki Michailidou, Qin Wang, Douglas F. Easton, Paul D.P. Pharoah, Marjanka K. Schmidt, Heli Nevanlinna
Software Mentions: 8
Published: over 7 years ago

10.2196/jmir.5461

What Are We Looking for in Computer-Based Learning Interventions in Medical Education? A Systematic Review
Cited by: 60
Author(s): Tiago Taveira-Gomes, Patrícia Ferreira, Isabel Taveira-Gomes, Mílton Severo, Manuela Ferreira
Software Mentions: 8
Published: almost 8 years ago

10.3390/s20154131

Framework and Methodology for Establishing Port-City Policies Based on Real-Time Composite Indicators and IoT: A Practical Use-Case
Cited by: 8
Author(s): Ignacio Lacalle, Andreu Belsa, Rafael Vaño, Carlos E. Palau
Software Mentions: 7
Published: almost 4 years ago

10.3389/fninf.2020.00024

Sammba-MRI: A Library for Processing SmAll-MaMmal BrAin MRI Data in Python
Cited by: 11
Author(s): Marina Célestine, Nachiket A. Nadkarni, Clément M. Garin, Salma Bougacha, Marc Dhénain
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41598-021-94442-8

Identification of pathological transcription in autosomal dominant polycystic kidney disease epithelia
Cited by: 1
Author(s): Sebastian Friedrich, Hannah Müller, Caroline Riesterer, Hannah Schüller, Katja Friedrich, Carlotta Leonie Wörner, Tilman Busch, Amandine Viau, E. Wolfgang Kuehn, Michael Köttgen, Alexis Hofherr
Software Mentions: 6
Published: almost 3 years ago

10.1093/gigascience/giaa116

The Dynamic Proteome of Oligodendrocyte Lineage Differentiation Features Planar Cell Polarity and Macroautophagy Pathways
Cited by: 8
Author(s): Paria Pooyan, Razieh Karamzadeh, Mehdi Mirzaei, Anna Meyfour, Ardeshir Amirkhan, Yunqi Wu, Vivek Gupta, Hossein Baharvand, Mohammad Javan, Ghasem Hosseini Salekdeh
Software Mentions: 6
Published: over 3 years ago

10.3758/s13428-016-0806-1

Real-time sharing of gaze data between multiple eye trackers–evaluation, tools, and advice
Cited by: 7
Author(s): Maria Nyström, Diederick C Niehorster, Tim Cornelissen, Henrik Garde
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-020-66374-2

Mutations in virus-derived small RNAs
Cited by: 6
Author(s): Deepti Nigam, Katherine LaTourrette, Hernán García-Ruíz
Software Mentions: 5
Published: almost 4 years ago

10.15252/msb.20209698

<scp>CEN</scp> ‐tools: an integrative platform to identify the contexts of essential genes
Cited by: 9
Author(s): Sumana Sharma, Cansu Dinçer, Paula Weidemüller, Gavin J. Wright, Evangelia Petsalaki
Software Mentions: 5
Published: over 3 years ago

10.1186/s13643-021-01738-x

Cognitive interventions in children and adolescents from low socioeconomic status backgrounds: a systematic review protocol of randomized controlled trials
Cited by: 2
Author(s): Rosalba Company-Córdoba, Antonio Sianes, Ian C. Simpson, Joaquín A. Ibáñez-Alfonso
Software Mentions: 5
Published: almost 3 years ago

10.3390/metabo8010016

RaMP: A Comprehensive Relational Database of Metabolomics Pathways for Pathway Enrichment Analysis of Genes and Metabolites
Cited by: 27
Author(s): Bofei Zhang, Senyang Hu, Elizabeth Baskin, Andrew Patt, Jalal K. Siddiqui, Ewy A. Mathé
Software Mentions: 5
Published: about 6 years ago

10.1038/srep44171

SEDA: A software package for the Statistical Earthquake Data Analysis
Cited by: 16
Author(s): Anna Maria Lombardi
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0244966

Clinical and pharmacokinetic/dynamic outcomes of prolonged infusions of beta-lactam antimicrobials: An overview of systematic reviews
Cited by: 18
Author(s): Pierre Thabet, Anchal Joshi, Erika MacDonald, Brian Hutton, Wei Cheng, Adrienne Stevens, Salmaan Kanji
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-98249-5

Psychological factors shaping public responses to COVID-19 digital contact tracing technologies in Germany
Cited by: 14
Author(s): Anastasia Kozyreva, Philipp Lorenz-Spreen, Stephan Lewandowsky, Paul Michael Garrett, Stefan M. Herzog, Thorsten Pachur, Ralph Hertwig
Software Mentions: 4
Published: over 2 years ago

10.1186/s13567-020-00772-2

Maternal and fetal thyroid dysfunction following porcine reproductive and respiratory syndrome virus2 infection
Cited by: 9
Author(s): J. Alex Pasternak, Daniel J. MacPhee, John C. S. Harding
Software Mentions: 4
Published: about 4 years ago

10.1038/srep31558

De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure
Cited by: 32
Author(s): Camilla Beate Hill, Andrew Cassin, Gabriel Keeble‐Gagnère, Monika S. Doblin, Antony Bacic, Ute Roessner
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pcbi.1005700

Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate
Cited by: 15
Author(s): David Amar, Ron Shamir, Daniel Yekutieli
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pgen.1007890

Genes encoding SATB2-interacting proteins in adult cerebral cortex contribute to human cognitive ability
Cited by: 15
Author(s): Isabella Cera, Laura Whitton, Gary Donohoe, Derek W. Morris, Georg Dechant, Galina Apostolova
Software Mentions: 4
Published: over 5 years ago

10.1186/s13072-016-0075-3

Profiling genome-wide DNA methylation
Cited by: 245
Author(s): Wai-Shin Yong, Fei‐Man Hsu, Pao‐Yang Chen
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pcbi.1007924

A validation framework for neuroimaging software: The case of population receptive fields
Cited by: 28
Author(s): Garikoitz Lerma-Usabiaga, Noah C. Benson, Jonathan Winawer, Brian A. Wandell
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0255545

Comparative efficacy of single-inhaler triple therapies for COPD: A protocol for systematic review and network meta-analysis
Cited by: 0
Author(s): Yu-Long Jiang, Hao Hu, Siu-wai Leung
Software Mentions: 4
Published: almost 3 years ago

10.1038/s41419-021-04075-y

A Catalogus Immune Muris of the mouse immune responses to diverse pathogens
Cited by: 0
Author(s): Céline Barlier, Diego Barriales, Alexey Samosyuk, Sascha Jung, Srikanth Ravichandran, Yulia A. Medvedeva, Juan Anguíta, Antonio del Sol
Software Mentions: 4
Published: almost 3 years ago

10.1038/srep43149

The hidden perils of read mapping as a quality assessment tool in genome sequencing
Cited by: 4
Author(s): Burhan Lehri, Alan M. Seddon, Andrey V. Karlyshev
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0115964

A Note on an Exon-Based Strategy to Identify Differentially Expressed Genes in RNA-Seq Experiments
Cited by: 12
Author(s): Asta Laiho, Laura L. Elo
Software Mentions: 4
Published: over 9 years ago

10.1128/mBio.03234-19

RNA-Seq Analysis Illuminates the Early Stages of <i>Plasmodium</i> Liver Infection
Cited by: 24
Author(s): Maria Toro-Moreno, Kayla Sylvester, Tamanna Srivastava, Dora Posfai, Emily R. Derbyshire
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-019-52478-x

Ligand-Induced Conformational Dynamics of A Tyramine Receptor from Sitophilus oryzae
Cited by: 14
Author(s): Mac Kevin E. Braza, Jerrica Dominique N. Gazmen, Eizadora T. Yu, Ricky B. Nellas
Software Mentions: 4
Published: over 4 years ago

10.1186/s12935-021-01833-y

Systematic analysis of the expression and prognosis relevance of FBXO family reveals the significance of FBXO1 in human breast cancer
Cited by: 17
Author(s): Yaqian Liu, Bo Pan, Weikun Qu, Yilong Cao, Jun Li, Hailin Zhao
Software Mentions: 4
Published: about 3 years ago

10.3390/life11020113

Transcriptomic Analysis of the Anthocyanin Biosynthetic Pathway Reveals the Molecular Mechanism Associated with Purple Color Formation in Dendrobium Nestor
Cited by: 12
Author(s): Xueqiang Cui, Deng Jieling, Chongxing Huang, Xuan Tang, Xianmin Li, Xiuling Li, Lu JiaShi, Zibin Zhang
Software Mentions: 4
Published: over 3 years ago

10.1007/s00018-017-2695-6

Downregulation of p53 drives autophagy during human trophoblast differentiation
Cited by: 23
Author(s): Martin Gauster, Sabine Maninger, Monika Siwetz, Alexander Deutsch, Amin El‐Heliebi, Dagmar Kolb-Lenz, Ursula Hiden, Gernot Desoyé, Florian Herse, Andreas Prokesch
Software Mentions: 4
Published: over 6 years ago

10.1093/gigascience/giy168

New<i>de novo</i>assembly of the Atlantic bottlenose dolphin (<i>Tursiops truncatus</i>) improves genome completeness and provides haplotype phasing
Cited by: 5
Author(s): Karine A. Martinez-Viaud, Cindy Lawley, Milmer Martinez Vergara, Gil Ben-Zvi, Tammy Biniashvili, Kobi Baruch, Judy St. Leger, Jennie Le, Aparna Natarajan, Marlem Rivera, Marbie Guillergan, Erich B. Jaeger, Brian Steffy, Aleksey V. Zimin
Software Mentions: 3
Published: over 5 years ago

10.1093/gigascience/giy150

Annotation of the<i>Giardia</i>proteome through structure-based homology and machine learning
Cited by: 19
Author(s): Brendan R E Ansell, Bernard J. Pope, Peter Georgeson, Samantha J. Emery-Corbin, Aaron R. Jex
Software Mentions: 3
Published: over 5 years ago

10.1186/s12877-017-0573-6

Effectiveness and safety of vitamin K antagonists and new anticoagulants in the prevention of thromboembolism in atrial fibrillation in older adults – a systematic review of reviews and the development of recommendations to reduce inappropriate prescribing
Cited by: 19
Author(s): Christina Sommerauer, Lisa Schlender, Marc Krause, Sabine Weißbach, Anja Rieckert, Yolanda V Martínez, David Reeves, Anna Renom‐Guiteras, Ilkka Kunnamo, Andreas Sönnichsen
Software Mentions: 3
Published: over 6 years ago

10.1186/gb-2010-11-8-r80

Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development
Cited by: 29
Author(s): Noëlle Billon, Raivo Kolde, Jüri Reimand, Miguel Caetano Monteiro, Meelis Kull, Hedi Peterson, Konstantin Tretyakov, Priit Adler, Brigitte Wdziekonski, Jaak Vilo, Christian Dani
Software Mentions: 3
Published: over 14 years ago

10.3390/genes11121478

The Future of Livestock Management: A Review of Real-Time Portable Sequencing Applied to Livestock
Cited by: 8
Author(s): Harrison J. Lamb, Ben J. Hayes, Loan Nguyen, Elizabeth M. Ross
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0159595

Incorporating and Compensating Cerebrospinal Fluid in Surface-Based Forward Models of Magneto- and Electroencephalography
Cited by: 52
Author(s): Matti Stenroos, Aapo Nummenmaa
Software Mentions: 3
Published: almost 8 years ago

10.1093/aobpla/plz019

Comparative transcriptomics sheds light on differential adaptation and species diversification between two Melastoma species and their F1 hybrid
Cited by: 5
Author(s): Wei Lun Ng, Wei Wu, Peishan Zou, Renchao Zhou
Software Mentions: 3
Published: about 5 years ago

10.1016/j.csbj.2020.03.022

Full-length transcriptome sequencing provides insights into the evolution of apocarotenoid biosynthesis in Crocus sativus
Cited by: 28
Author(s): Junyang Yue, Ran Wang, Xiaojing Ma, Jiayi Liu, Xiaohui Lu, Sambhaji Balaso Thakar, Ning An, Jia Liu, Enhua Xia, Yongsheng Liu
Software Mentions: 3
Published: over 4 years ago

10.1016/j.dcn.2020.100816

The YOUth cohort study: MRI protocol and test-retest reliability in adults
Cited by: 22
Author(s): Elizabeth E.L. Buimer, Pascal Pas, Rachel M. Brouwer, Martijn Froeling, Hans Hoogduin, Alexander Leemans, Peter R. Luijten, Bastiaan J. van Nierop, Mathijs Raemaekers, Hugo G. Schnack, Jalmar Teeuw, Matthijs Vink, Fredy Visser, Hilleke E. Hulshoff Pol, René C.W. Mandl
Software Mentions: 3
Published: over 3 years ago

10.3389/fcvm.2020.600497

Coronary Artery Calcification Under Statin Therapy and Its Effect on Cardiovascular Outcomes: A Systematic Review and Meta-Analysis
Cited by: 9
Author(s): Runmin Peng, Jianqing Ju, Qian Lin, Hao Xu
Software Mentions: 3
Published: over 3 years ago

10.3390/plants8090335

Infections of the Xylella fastidiosa subsp. pauca Strain “De Donno” in Alfalfa (Medicago sativa) Elicits an Overactive Immune Response
Cited by: 10
Author(s): Raied Abou Kubaa, Annalisa Giampetruzzi, Giuseppe Altamura, María Saponari, P. Saldarelli
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-2164-9-446

Molecular architecture of the fruit fly's airway epithelial immune system
Cited by: 58
Author(s): Christina Wagner, Kerstin Isermann, Heinz Fehrenbach, Thomas Roeder
Software Mentions: 3
Published: over 15 years ago

10.1371/journal.pgen.1009805

A broad analysis of splicing regulation in yeast using a large library of synthetic introns
Cited by: 11
Author(s): Dvir Schirman, Zohar Yakhini, Yitzhak Pilpel, Orna Dahan
Software Mentions: 3
Published: over 2 years ago

10.1186/s12870-021-03154-8

Regulation of wound ethylene biosynthesis by NAC transcription factors in kiwifruit
Cited by: 11
Author(s): Niels J. Nieuwenhuizen, Xiuyin Chen, Mickaël Pellan, Lei Zhang, Lindy F. Guo, William A. Laing, Robert J. Schaffer, Ross G. Atkinson, Andrew C. Allan
Software Mentions: 3
Published: over 2 years ago

10.1155/2020/6628641

An Investigation of the Molecular Mechanisms Underlying the Analgesic Effect of Jakyak-Gamcho Decoction: A Network Pharmacology Study
Cited by: 8
Author(s): Ho-Sung Lee, In-Hee Lee, Kyung‐Won Kang, Sang‐In Park, Tae-Wook Kwon, Ho-Sung Lee
Software Mentions: 3
Published: over 3 years ago

10.3390/v8070196

Molecular and Genetic Characterization of HIV-1 Tat Exon-1 Gene from Cameroon Shows Conserved Tat HLA-Binding Epitopes: Functional Implications
Cited by: 8
Author(s): Georges Této, Julius Y. Fonsah, Claude Tayou Tagny, Dora Mbanya, Emilienne Nchindap, Léopoldine Kenmogne, Joseph Fokam, Dora M. Njamnshi, Charles Kouanfack, Alfred K. Njamnshi, Georgette D. Kanmogne
Software Mentions: 3
Published: almost 8 years ago

10.3389/fmicb.2012.00328

Systems Biology of Microbial Infection
Cited by: 7
Author(s): Reinhard Guthke, Jörg Linde, Franziska Mech, Marc Thilo Figge
Software Mentions: 3
Published: over 12 years ago

10.1186/s12891-015-0745-5

Genome-wide DNA methylation study of hip and knee cartilage reveals embryonic organ and skeletal system morphogenesis as major pathways involved in osteoarthritis
Cited by: 41
Author(s): Erfan Aref‐Eshghi, Yuhua Zhang, Ming Liu, Patricia E. Harper, Glynn Martin, Andrew Furey, Roger Green, Guang Sun, Proton Rahman, Guangju Zhai
Software Mentions: 3
Published: over 8 years ago

10.1093/hmg/ddz294

Insights into the genetic basis of retinal detachment
Cited by: 24
Author(s): Thibaud Boutin, David G. Charteris, Aman Chandra, Susan Campbell, Caroline Hayward, Archie Campbell, Priyanka Nandakumar, David A. Hinds, Danny Mitry, Véronique Vitart
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-021-98073-x

Pressure ulcers microbiota dynamics and wound evolution
Cited by: 12
Author(s): Catherine Dunyach‐Remy, Florian Salipante, Jean‐Philippe Lavigne, Maxime Brunaud, Christophe Dematteı, Alex Yahiaoui-Martinez, Sophie Bastide, C. Palayer, Albert Sotto, Anthony Gélis
Software Mentions: 3
Published: over 2 years ago

10.1038/srep23092

Unlocking the genetic diversity of Creole wheats
Cited by: 63
Author(s): Prashant Vikram, Jorge Franco, Juan Burgueño, Huihui Li, Deepmala Sehgal, Carolina Saint Pierre, Claudia Vásquez, Clay Sneller, Maria Tattaris, Carlos Guzmán, Carolina Sansaloni, Guillermo Fuentes-Dávila, M.P. Reynolds, Kai Sonder, Pawan Kumar Singh, Thomas Payne, Peter Wenzl, Achla Sharma, N. S. Bains, Gyanendra Pratap Singh, José Crossa, Sukhwinder Singh
Software Mentions: 3
Published: about 8 years ago

10.1097/MD.0000000000013158

Resistance profile to antimicrobial agents in the main circulating bacteria isolated from acute periodontal and endodontic infections in Latin America (MICROBE- DENT)
Cited by: 2
Author(s): Flávia Casale Abe, Cristiane de Cássia Bergamaschi, Mabel Fernandes Figueiró, Luciane Cruz Lopes
Software Mentions: 3
Published: over 5 years ago

10.1186/bcr3015

Breast tumors from CHEK2 1100delC- mutation carriers: genomic landscape and clinical implications
Cited by: 48
Author(s): Taru Muranen, Dario Greco, Rainer Fagerholm, Outi Kilpivaara, Kati Kämpjärvi, Kristiina Aittomäki, Carl Blomqvist, Päivi Heikkilä, Åke Borg, Heli Nevanlinna
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0168597

Bibliometrics for Social Validation
Cited by: 5
Author(s): Daniel J. Hicks
Software Mentions: 3
Published: over 7 years ago

10.1186/s40510-020-00326-4

Effects of micro-osteoperforations performed with Propel system on tooth movement, pain/quality of life, anchorage loss, and root resorption: a systematic review and meta-analysis
Cited by: 10
Author(s): Cibelle Cristina Oliveira dos Santos, Paulo Mecenas, Mônica Lídia Santos de Castro Aragón, David Normando
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0031858

Functional Complexity of the Axonal Growth Cone: A Proteomic Analysis
Cited by: 38
Author(s): Adriana Estrada-Bernal, Staci D. Sanford, Lucas J. Sosa, Glenn C. Simon, Kirk C. Hansen, Karl H. Pfenninger
Software Mentions: 3
Published: about 12 years ago

10.1074/jbc.RA120.012788

Small molecule AX-024 reduces T cell proliferation independently of CD3ϵ/Nck1 interaction, which is governed by a domain swap in the Nck1-SH3.1 domain
Cited by: 10
Author(s): Kirsten Richter, Arne C. Rufer, Magali Muller, Dominique Burger, Fabio Casagrande, Tabea Grossenbacher, Sylwia Huber, Melanie N. Hug, Philipp Koldewey, Andrea D’Osualdo, Daniel Schlatter, Theodor Stoll, M.G. Rudolph
Software Mentions: 3
Published: almost 4 years ago

10.1038/sdata.2017.97

Morphology of Dbx1 respiratory neurons in the preBötzinger complex and reticular formation of neonatal mice
Cited by: 11
Author(s): Victoria T Akins, Krishanthi Weragalaarachchi, Maria Cristina D. Picardo, Ann L. Revill, Christopher A. Del Negro
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-34188-y

Genomic signatures of local adaptation to the degree of environmental predictability in rotifers
Cited by: 21
Author(s): Lluis Franch‐Gras, Christoph Hahn, Eduardo M. García‐Roger, Marı́a José Carmona, Manuel Serra, África Gómez
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2318-12-19

Implementing the chronic care model for frail older adults in the Netherlands: study protocol of ACT (frail older adults: care in transition)
Cited by: 49
Author(s): Maaike Muntinga, Emiel O. Hoogendijk, Karen M van Leeuwen, Hein van Hout, Jos W. R. Twisk, Henriëtte E. van der Horst, Giel Nijpels, A.P.D. Jansen
Software Mentions: 2
Published: about 12 years ago

10.1093/gigascience/giy143

The genome of an underwater architect, the caddisfly<i>Stenopsyche tienmushanensis</i>Hwang (Insecta: Trichoptera)
Cited by: 37
Author(s): Shiqi Luo, Min Tang, Paul B. Frandsen, Russell J. Stewart, Xin Zhou
Software Mentions: 2
Published: over 5 years ago

10.1007/s11682-018-9853-9

Alterations in volumes and MRI features of amygdala in Chinese autistic preschoolers associated with social and behavioral deficits
Cited by: 8
Author(s): Zhiwei Zhu, Xiangming Fang, Hongwei Chen, Xiaogang Zhu, Lili Zhang, Xiaodong Zhai, Zhi-Min Cui, Quansheng Gao
Software Mentions: 2
Published: about 6 years ago

10.1186/1471-2156-9-92

A large-scale survey of genetic copy number variations among Han Chinese residing in Taiwan
Cited by: 23
Author(s): Chang‐Yu Lin, Ling-Hui Li, Sheng-Feng Ho, Tzu-Po Chuang, Jer‐Yuarn Wu, Yuan-Tsong Chen, Cathy S.J. Fann
Software Mentions: 2
Published: over 15 years ago

10.5935/1518-0557.20200099

Embryo Culture Media Influence on Live Birth Rate and Birthweight after IVF/ICSI: A Systematic Review Comparing Vitrolife G5 Media to Other Common Culture Media
Cited by: 0
Author(s): Lena Bick, Anja Schulz Nielsen, Ulla Breth Knudsen
Software Mentions: 2
Published: over 3 years ago

10.3389/fpsyg.2021.698799

Massively Multiplayer Online Games and Well-Being: A Systematic Literature Review
Cited by: 26
Author(s): Lisa Raith, Julie Bignill, Vasileios Stavropoulos, Prudence Millear, Andrew Allen, Helen M. Stallman, Jonathan Mason, Tamara De Regt, Andrew Wood, Lee Kannis‐Dymand
Software Mentions: 2
Published: almost 3 years ago

10.3389/fped.2021.617298

Differential Expression Profiles and Functional Analysis of Long Non-coding RNAs in Children With Dilated Cardiomyopathy
Cited by: 0
Author(s): Dongxiao Cai, Bo Han, Wei Sun, Li Zhang, Jing Wang, Diandong Jiang, Honglei Jia
Software Mentions: 2
Published: over 3 years ago

10.3389/fvets.2019.00345

In vivo Diffusion Tensor Magnetic Resonance Tractography of the Sheep Brain: An Atlas of the Ovine White Matter Fiber Bundles
Cited by: 17
Author(s): Valentina Pieri, Marco Trovatelli, Marcello Cadioli, Davide Danilo Zani, Stefano Brizzola, Giuliano Ravasio, Fabio Acocella, M. Di Giancamillo, Luca Malfassi, Mario Dolera, Marco Riva, Lorenzo Bello, Andrea Falini, Antonella Castellano
Software Mentions: 2
Published: over 4 years ago

10.1155/2014/730814

BLAT-Based Comparative Analysis for Transposable Elements: BLATCAT
Cited by: 0
Author(s): Sang-Bum Lee, Sumin Oh, Keunsoo Kang, Kyudong Han
Software Mentions: 2
Published: over 10 years ago

10.1155/2021/5568724

Identification of Inflammatory Genes, Pathways, and Immune Cells in Necrotizing Enterocolitis of Preterm Infant by Bioinformatics Approaches
Cited by: 2
Author(s): Lili Zhang, Lianfeng Sun, Mingli Wu, Jie Huang
Software Mentions: 2
Published: about 3 years ago

10.3389/fnins.2021.624911

Test-Retest Reliability of Neural Correlates of Response Inhibition and Error Monitoring: An fMRI Study of a Stop-Signal Task
Cited by: 11
Author(s): Ozlem Korucuoglu, M. Harms, Serguei V. Astafiev, Semyon Golosheykin, James T. Kennedy, M Deanna, Andrey P. Anokhin
Software Mentions: 2
Published: over 3 years ago

10.3389/fvets.2018.00281

Capsular Switching and ICE Transformation Occurred in Human Streptococcus agalactiae ST19 With High Pathogenicity to Fish
Cited by: 3
Author(s): Rui Wang, Liping Li, Ting Huang, Weiyi Huang, Aiying Lei, Ming Chen
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.01588

The Isolation and Genome Sequencing of Five Novel Bacteriophages From the Rumen Active Against Butyrivibrio fibrisolvens
Cited by: 3
Author(s): Jessica C. A. Friedersdorff, Alison H. Kingston‐Smith, Justin A. Pachebat, Alan Cookson, David Rooke, Christopher J. Creevey
Software Mentions: 2
Published: almost 4 years ago

10.3389/fninf.2018.00101

Arterial Spin Labeling Reveals Disrupted Brain Networks and Functional Connectivity in Drug-Resistant Temporal Epilepsy
Cited by: 13
Author(s): Ilaria Boscolo Galazzo, Silvia Francesca Storti, Anna Barnes, Bianca De Blasi, Enrico De Vita, Matthias J. Koepp, John S. Duncan, Ashley M. Groves, Francesca Pizzini, Gloria Menegaz, Francesco Fraioli
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.00287

Exploring Evolutionary and Transmission Dynamics of HIV Epidemic in Serbia: Bridging Socio-Demographic With Phylogenetic Approach
Cited by: 8
Author(s): Luka Jovanović, Marina Šiljić, Valentina Ćirković, Dubravka Salemović, Ivana Pešić-Pavlović, Marija Todorović, Jovan Ranin, Djordje Jevtović, Maja Stanojević
Software Mentions: 2
Published: about 5 years ago

10.1155/2021/6158275

Effect of Acupuncture on Cognitive Function of Insomnia Patients Compared with Drugs: A Protocol for Meta-analysis and Systematic Review
Cited by: 0
Author(s): Shan Qin, Jing Jiang, Wei Wu, Xiaoqiu Wang, Hanqing Xi, Qin-Qin Fang, Bin Xu, Chengyong Liu
Software Mentions: 2
Published: over 2 years ago

10.3389/fmicb.2019.00982

Green Infrastructure Design Influences Communities of Urban Soil Bacteria
Cited by: 34
Author(s): Jessica Joyner, Jordan Kerwin, Maha Deeb, George Lozefski, Bharath Prithiviraj, Anna Paltseva, John L. McLaughlin, Peter M. Groffman, Zhongqi Cheng, Theodore R. Muth
Software Mentions: 2
Published: about 5 years ago

10.1534/g3.116.034389

Mitochondrial Carriers Link the Catabolism of Hydroxyaromatic Compounds to the Central Metabolism in <i>Candida parapsilosis</i>
Cited by: 7
Author(s): Igor Zeman, Martina Neboháčová, Gabriela Gérecová, Kornélia Katonová, Eva Jánošíková, Michaela Jakúbková, Ivana Centárová, Ivana Dunčková, Ľubomír Tomáška, Leszek P. Pryszcz, Toni Gabaldón, Jozef Nosek
Software Mentions: 2
Published: over 7 years ago

10.1002/acm2.13200

Toward automation of initial chart check for photon/electron EBRT: the clinical implementation of new AAPM task group reports and automation techniques
Cited by: 3
Author(s): Huijun Xu, Baoshe Zhang, Mariana Guerrero, Sung‐Woo Lee, Narottam Lamichhane, Shifeng Chen, B Yi
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pgen.1006841

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria
Cited by: 52
Author(s): Max Feldman, Rachel Paul, Darshi Banan, Jennifer F. Barrett, José Sebastián, Muh Ching Yee, Hui Jiang, Alexander E. Lipka, Thomas P. Brutnell, José R. Dinneny, Andrew D. B. Leakey, Ivan Baxter
Software Mentions: 2
Published: almost 7 years ago

10.1080/13814788.2018.1515907

Clinical leadership and integrated primary care: A systematic literature review
Cited by: 38
Author(s): Nieuwboer, Rob van der Sande, Marjolein A. van der Marck, Marcel G M Olde Rikkert, Marieke Perry
Software Mentions: 2
Published: over 5 years ago

10.1111/evo.12678

Speciation by genome duplication: Repeated origins and genomic composition of the recently formed allopolyploid species<i>Mimulus peregrinus</i>
Cited by: 62
Author(s): Mario Vallejo‐Marín, Richard J. A. Buggs, Arielle M. Cooley, Joshua R. Puzey
Software Mentions: 2
Published: almost 9 years ago

10.1242/dmm.031773

Systemic HIV-1 infection produces a unique glial footprint in humanized mouse brains
Cited by: 16
Author(s): Weizhe Li, Santhi Gorantla, Howard Eliot Gendelman, Larisa Y. Poluektova
Software Mentions: 2
Published: over 7 years ago

10.1016/j.dib.2019.103829

Potential of cereal-based agricultural residues available for bioenergy production
Cited by: 17
Author(s): Lisandra Rocha‐Meneses, Thaisa Bergamo, Timo Kikas
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.11713

Interventions to improve the well-being of family caregivers of patients on hemodialysis and peritoneal dialysis: a systematic review
Cited by: 5
Author(s): Ana Carolina de Andrade Hovadick, Viviane Rodrigues Jardim, Constança Paúl, Adriana Pagano, Ilka Afonso Reis, Heloísa de Carvalho Torres
Software Mentions: 2
Published: almost 3 years ago

10.1093/database/bau127

CyanOmics: an integrated database of omics for the model cyanobacterium Synechococcus sp. PCC 7002
Cited by: 15
Author(s): Yaohua Yang, Jie Feng, Tao Li, Feng Ge, Jindong Zhao
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.10159

Transcriptome-wide identification of MAPKKK genes in bermudagrass (<i>Cynodon dactylon</i> L.) and their potential roles in low temperature stress responses
Cited by: 3
Author(s): Wei Wang, Anwen Shao, Erick Amombo, Shugao Fan, Xiao Xu, Jinmin Fu
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pbio.2006519

Copper-dependent amino oxidase 3 governs selection of metabolic fuels in adipocytes
Cited by: 41
Author(s): Haojun Yang, Martina Ralle, Michael J. Wolfgang, Neha Dhawan, Jason L. Burkhead, Susana Rodriguez, Jack H. Kaplan, G. William Wong, Norman J. Haughey, Svetlana Lutsenko
Software Mentions: 2
Published: over 5 years ago

10.1186/s12014-019-9228-2

Rapid detection of colistin resistance protein MCR-1 by LC–MS/MS
Cited by: 11
Author(s): Honghui Wang, Yong Chen, Jeffrey R Strich, Steven K. Drake, Jung Ho Youn, Avi Z. Rosenberg, Marjan Guček, Patrick T. McGann, Anthony F. Suffredini, John P. Dekker
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers12040942

Brigatinib and Alectinib for ALK Rearrangement-Positive Advanced Non-Small Cell Lung Cancer with or without Central Nervous System Metastasis: A Systematic Review and Network Meta-Analysis
Cited by: 26
Author(s): Koichi Andō, Kaho Akimoto, Hiroki Sato, Ryo Manabe, Yasunari Kishino, Tetsuya Homma, Shoichi Kusumoto, Toshimitsu Yamaoka, Akihiko Tanaka, Tohru Ohmori, Hironori Sagara
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0103160

Characterization of Hepatitis C Virus Genotypes by Direct Sequencing of HCV 5′UTR Region of Isolates from Saudi Arabia
Cited by: 13
Author(s): Medhat K. Shier, Mohammad S. El-Wetidy, Hebatallah H. Ali, Mohammad M. Al‐Qattan
Software Mentions: 2
Published: almost 10 years ago

10.3390/cancers13081905

Contemporary Neoadjuvant Therapies for High-Risk Melanoma: A Systematic Review
Cited by: 7
Author(s): Kerianne Boulva, Sameer Apte, Ashley M. Yu, Alexandre Tran, Risa Shorr, Xinni Song, Michael Ong, Carolyn Nessim
Software Mentions: 2
Published: about 3 years ago

10.1016/j.cortex.2016.03.013

The tract terminations in the temporal lobe: Their location and associated functions
Cited by: 47
Author(s): Claude J. Bajada, Hamied A. Haroon, Hojjatollah Azadbakht, Geoffrey Parker, Matthew A. Lambon Ralph, Lauren Cloutman
Software Mentions: 2
Published: over 6 years ago

10.3389/fnhum.2019.00462

Short-Term Classification Learning Promotes Rapid Global Improvements of Information Processing in Human Brain Functional Connectome
Cited by: 3
Author(s): Antonio Zippo, Isabella Castiglioni, Jianyi Lin, Virginia Maria Borsa, Maurizio Valente, Gabriele Biella
Software Mentions: 2
Published: over 4 years ago

10.1186/s13195-021-00831-6

Anticancer drugs repurposed for Alzheimer’s disease: a systematic review
Cited by: 12
Author(s): Antonio Ancidoni, Ilaria Bacigalupo, Giulia Remoli, Eleonora Lacorte, Paola Piscopo, Giulia Sarti, Massimo Corbo, Nicola Vanacore, Marco Canevelli
Software Mentions: 2
Published: about 3 years ago

10.3390/molecules25214904

Computational Studies towards the Identification of Novel Rhodopsin-Binding Compounds as Chemical Chaperones for Misfolded Opsins
Cited by: 11
Author(s): Gaia Pasqualetto, Martin Schepelmann, Carmine Varricchio, Elisa Pileggi, Caroline Khogali, Siân R. Morgan, Ian Boostrom, Malgorzata Barbara Rozanowska, Andrea Brancale, Salvatore Ferla, Marcella Bassetto
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0255985

Land use and semen quality: A fertility center cohort study
Cited by: 2
Author(s): Sug‐Bong Choe, Seulgi Kim, Changmin Im, Sun‐Young Kim, Gregory A. Wellenius, You Shin Kim, Tae Ki Yoon, Dae Keun Kim
Software Mentions: 2
Published: almost 3 years ago