Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.20900/immunometab20210022

https://doi.org/10.20900/immunometab20210022

Meta-Analysis of Smooth Muscle Lineage Transcriptomes in Atherosclerosis and Their Relationships to In Vitro Models

Cited by: 21
Author(s): Austin C. Conklin, Hitoo Nishi, Florencia Schlamp, Tiit Örd, Kadri Õunap, Minna U. Kaikkonen, Edward A. Fisher, Casey E. Romanoski
Published: over 3 years ago

Software Mentions 9

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: cellranger
Translate Spreadsheet Cell Ranges to Rows and Columns
Papers that mentioned: 79
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: Harmony
Harmony Programming Language
Papers that mentioned: 504
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
pypi: tool
A compact modular conf/web/console framework.
Papers that mentioned: 293