Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: pybel

https://packages.ecosyste.ms/registries/pypi.org/packages/pybel

Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)
92 versions
Latest release: almost 3 years ago
6 dependent packages
1,521 downloads last month

Papers Mentioning pybel 7

10.1186/s13321-020-00455-2

spyrmsd: symmetry-corrected RMSD calculations in Python
Cited by: 23
Author(s): Rocco Meli, Philip C. Biggin
Software Mentions: 13
Published: over 4 years ago

PyBioMed: a python library for various molecular representations of chemicals, proteins and DNAs and their interactions
Cited by: 86
Author(s): Jie Dong, Zhi‐Jiang Yao, Lin Zhang, Feijun Luo, Qinlu Lin, Aiping Lu, Alex F. Chen, Dong‐Sheng Cao
Software Mentions: 8
Published: over 6 years ago

10.1186/1752-153X-2-5

Pybel: a Python wrapper for the OpenBabel cheminformatics toolkit
Cited by: 297
Author(s): Noel M. O’Boyle, Chris Morley, Geoffrey Hutchison
Software Mentions: 4
Published: over 16 years ago

10.1186/s13321-015-0063-9

Proteochemometric modelling coupled to in silico target prediction: an integrated approach for the simultaneous prediction of polypharmacology and binding affinity/potency of small molecules
Cited by: 30
Author(s): Shardul Paricharak, Isidro Cortés-Ciriano, Adriaan P. IJzerman, Thérèse E. Malliavin, Andreas Bender
Software Mentions: 2
Published: over 9 years ago

10.1186/s13321-020-00437-4

Aromatic clusters in protein–protein and protein–drug complexes
Cited by: 31
Author(s): Esteban Lanzarotti, Lucas A. Defelipe, Marcelo A. Martí, Adrián Turjanski
Software Mentions: 1
Published: over 4 years ago

10.1093/database/baz068

Re-curation and rational enrichment of knowledge graphs in Biological Expression Language
Cited by: 22
Author(s): Charles Tapley Hoyt, Daniel Domingo‐Fernándéz, Rana Aldisi, Lingling Xu, Kristian Kolpeja, Sandra Spalek, Esther Wollert, John A. Bachman, Benjamin M. Gyori, Patrick Greene, Martin Hofmann‐Apitius
Software Mentions: 1
Published: almost 6 years ago

10.1080/14756366.2019.1705291

Development of a cheminformatics platform for selectivity analyses of carbonic anhydrase inhibitors
Cited by: 11
Author(s): Giulio Poli, Salvatore Galati, Adriano Martinelli, Claudiu T. Supuran, Tiziano Tuccinardi
Software Mentions: 1
Published: almost 5 years ago