Projects: pypi: pybel
https://packages.ecosyste.ms/registries/pypi.org/packages/pybel
Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)
92 versions
Latest release: over 4 years ago
6 dependent packages
1,521 downloads last month
Enhanced Analysis
Educational Contributors:
nicola.soranzo@earlham.ac.uk
Repository Activity:
Repository Owner:
PyBEL (organization)
đ¶ïž An ecosystem in Python for working with the Biological Expression Language (BEL) Institutional
đ¶ïž An ecosystem in Python for working with the Biological Expression Language (BEL) Institutional
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Educational commit emails
1 contributors with educational email addresses -
+15
Institutional repository owner
Repository owned by research institution -
+20
Science terms in README
10 scientific terms found in README -
+10
DOI references
1 DOI references found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning pybel 7
10.1186/s13321-020-00455-2
spyrmsd: symmetry-corrected RMSD calculations in PythonCited by: 23
Author(s): Rocco Meli, Philip C. Biggin
Software Mentions: 13
Published: almost 6 years ago
10.1186/s13321-018-0270-2
PyBioMed: a python library for various molecular representations of chemicals, proteins and DNAs and their interactionsCited by: 86
Author(s): Jie Dong, ZhiâJiang Yao, Lin Zhang, Feijun Luo, Qinlu Lin, Aiping Lu, Alex F. Chen, DongâSheng Cao
Software Mentions: 8
Published: over 8 years ago
10.1186/1752-153X-2-5
Pybel: a Python wrapper for the OpenBabel cheminformatics toolkitCited by: 297
Author(s): Noel M. OâBoyle, Chris Morley, Geoffrey Hutchison
Software Mentions: 4
Published: over 18 years ago
10.1186/s13321-015-0063-9
Proteochemometric modelling coupled to in silico target prediction: an integrated approach for the simultaneous prediction of polypharmacology and binding affinity/potency of small moleculesCited by: 30
Author(s): Shardul Paricharak, Isidro Cortés-Ciriano, Adriaan P. IJzerman, ThérÚse E. Malliavin, Andreas Bender
Software Mentions: 2
Published: about 11 years ago
10.1186/s13321-020-00437-4
Aromatic clusters in proteinâprotein and proteinâdrug complexesCited by: 31
Author(s): Esteban Lanzarotti, Lucas A. Defelipe, Marcelo A. MartĂ, AdriĂĄn Turjanski
Software Mentions: 1
Published: about 6 years ago
10.1093/database/baz068
Re-curation and rational enrichment of knowledge graphs in Biological Expression LanguageCited by: 22
Author(s): Charles Tapley Hoyt, Daniel DomingoâFernĂĄndĂ©z, Rana Aldisi, Lingling Xu, Kristian Kolpeja, Sandra Spalek, Esther Wollert, John A. Bachman, Benjamin M. Gyori, Patrick Greene, Martin HofmannâApitius
Software Mentions: 1
Published: over 7 years ago
10.1080/14756366.2019.1705291
Development of a cheminformatics platform for selectivity analyses of carbonic anhydrase inhibitorsCited by: 11
Author(s): Giulio Poli, Salvatore Galati, Adriano Martinelli, Claudiu T. Supuran, Tiziano Tuccinardi
Software Mentions: 1
Published: over 6 years ago