Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13321-018-0270-2

https://doi.org/10.1186/s13321-018-0270-2

PyBioMed: a python library for various molecular representations of chemicals, proteins and DNAs and their interactions

Cited by: 86
Author(s): Jie Dong, Zhi‐Jiang Yao, Lin Zhang, Feijun Luo, Qinlu Lin, Aiping Lu, Alex F. Chen, Dong‐Sheng Cao
Published: over 6 years ago

Software Mentions 8

bioconductor: ChemmineR
Cheminformatics Toolkit for R
Papers that mentioned: 39
bioconductor: Rcpi
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Papers that mentioned: 13
cran: rcdk
Interface to the 'CDK' Libraries
Papers that mentioned: 30
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: propy
Library of class property creation functions for type conversion and validation.
Papers that mentioned: 35
pypi: pybel
Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)
Papers that mentioned: 7
pypi: repDNA
a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects
Papers that mentioned: 19
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071