Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: Rcpi
https://packages.ecosyste.ms/registries/bioconductor.org/packages/Rcpi
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
1 version
Latest release: about 1 year ago
1 dependent package
31,581 downloads total
Papers Mentioning Rcpi 13
10.1186/s13321-017-0215-1
ChemSAR: an online pipelining platform for molecular SAR modelingCited by: 39
Author(s): Jie Dong, Zhi Jiang Yao, Min Zhu, Ning Ning Wang, Ben Lü, Alex F. Chen, Ai Ping Lu, Hongyu Miao, Wen Zeng, Dong Sheng Cao
Software Mentions: 11
Published: over 7 years ago
10.1186/s13321-018-0270-2
PyBioMed: a python library for various molecular representations of chemicals, proteins and DNAs and their interactionsCited by: 86
Author(s): Jie Dong, Zhi‐Jiang Yao, Lin Zhang, Feijun Luo, Qinlu Lin, Aiping Lu, Alex F. Chen, Dong‐Sheng Cao
Software Mentions: 8
Published: over 6 years ago
10.1371/journal.pone.0124600
MLViS: A Web Tool for Machine Learning-Based Virtual Screening in Early-Phase of Drug Discovery and DevelopmentCited by: 36
Author(s): Selçuk Korkmaz, Gökmen Zararsız, Dinçer Göksülük
Software Mentions: 7
Published: over 9 years ago
10.1186/s13321-016-0146-2
BioTriangle: a web-accessible platform for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactionsCited by: 36
Author(s): Jie Dong, Zhi‐Jiang Yao, Ming Wen, Min Zhu, Ningning Wang, Hongyu Miao, Aiping Lu, Wenbin Zeng, Dong‐Sheng Cao
Software Mentions: 6
Published: over 8 years ago
10.1038/s41598-018-33911-z
Prediction of high anti-angiogenic activity peptides in silico using a generalized linear model and feature selectionCited by: 33
Author(s): José Liñares-Blanco, Ana B. Porto-Pazos, Alejandro Pazos, Carlos Fernández-Lozano
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pone.0246920
DTI-SNNFRA: Drug-target interaction prediction by shared nearest neighbors and fuzzy-rough approximationCited by: 5
Author(s): Sk Mazharul Islam, Sk Md Mosaddek Hossain, Sumanta Ray
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pcbi.1007541
Overlap matrix completion for predicting drug-associated indicationsCited by: 34
Author(s): Mingzhu Yang, Huimin Luo, Yaohang Li, Fang‐Xiang Wu, Jianxin Wang
Software Mentions: 3
Published: almost 5 years ago
10.1186/s13321-018-0258-y
Mordred: a molecular descriptor calculatorCited by: 528
Author(s): Hirotomo Moriwaki, Yinbao Tian, Norihito Kawashita, Tatsuya Takagi
Software Mentions: 3
Published: over 6 years ago
10.3390/ijms21165694
Predicting Drug-Target Interactions with Electrotopological State Fingerprints and Amphiphilic Pseudo Amino Acid CompositionCited by: 9
Author(s): Cheng Wang, Wenyan Wang, Kun Lü, Jun Zhang, Peng Chen, Bing Wang
Software Mentions: 2
Published: about 4 years ago
10.3389/fphys.2019.01044
Deep Learning-Based Structure-Activity Relationship Modeling for Multi-Category Toxicity Classification: A Case Study of 10K Tox21 Chemicals With High-Throughput Cell-Based Androgen Receptor Bioassay DataCited by: 36
Author(s): Gabriel Idakwo, Sundarapandian Thangapandian, Joseph Luttrell, Zhaoxian Zhou, Chaoyang Zhang, Ping Gong
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-020-63842-7
A comparative chemogenic analysis for predicting Drug-Target Pair via Machine Learning ApproachesCited by: 12
Author(s): Aman Chandra Kaushik, Aamir Mehmood, Xiaofeng Dai, Dong‐Qing Wei
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-65584-y
Prediction of breast cancer proteins involved in immunotherapy, metastasis, and RNA-binding using molecular descriptors and artificial neural networksCited by: 21
Author(s): Andrés López‐Cortés, Alejandro Cabrera-Andrade, José M. Vázquez-Naya, Alejandro Pazos, Humberto Gonzáles-Díaz, César Paz‐y‐Miño, Santiago Guerrero, Yunierkis Pérez-Castillo, Eduardo Tejera, Cristian R. Munteanu
Software Mentions: 1
Published: over 4 years ago
10.1186/s12859-016-1377-y
Drug-target interaction prediction via class imbalance-aware ensemble learningCited by: 86
Author(s): Ali Ezzat, Min Wu, Yuanyuan Liu, Chee Keong Kwoh
Software Mentions: 1
Published: almost 8 years ago