Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00903-19

https://doi.org/10.1128/mSystems.00903-19

manta: a Clustering Algorithm for Weighted Ecological Networks

Cited by: 7
Author(s): Lisa Röttjers, Karoline Faust
Published: over 4 years ago

Software Mentions 12

bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: MCL
Markov Cluster Algorithm
Papers that mentioned: 563
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: manta
A Python SDK for Joyent's Manta service
Papers that mentioned: 14
pypi: networkx
Python package for creating and manipulating graphs and networks
Papers that mentioned: 110
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071