Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00903-19

https://doi.org/10.1128/mSystems.00903-19

Cited by: 7
Author(s): Lisa Röttjers, Karoline Faust
Published: over 4 years ago

Software Mentions 12

bioconductor: phyloseq

Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702

cran: igraph

Network Analysis and Visualization
Papers that mentioned: 1,555

cran: MCL

Markov Cluster Algorithm
Papers that mentioned: 563

cran: vegan

Community Ecology Package
Papers that mentioned: 6,903

cran: WGCNA

Weighted Correlation Network Analysis
Papers that mentioned: 3,479

pypi: igraph

High performance graph data structures and algorithms
Papers that mentioned: 1,555

pypi: manta

A Python SDK for Joyent's Manta service
Papers that mentioned: 14

pypi: networkx

Python package for creating and manipulating graphs and networks
Papers that mentioned: 110

pypi: numpy

Fundamental package for array computing in Python
Papers that mentioned: 832

pypi: pandas

Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640

pypi: scikit-learn

A set of python modules for machine learning and data mining
Papers that mentioned: 2,431

pypi: scipy

Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071