Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: manta

https://packages.ecosyste.ms/registries/pypi.org/packages/manta

A Python SDK for Joyent's Manta service
13 versions
Latest release: almost 6 years ago
70 downloads last month

Papers Mentioning manta 14

10.1128/mSystems.00903-19

manta: a Clustering Algorithm for Weighted Ecological Networks
Cited by: 7
Author(s): Lisa Röttjers, Karoline Faust
Software Mentions: 12
Published: almost 5 years ago

MoMI-G: modular multi-scale integrated genome graph browser
Cited by: 20
Author(s): Toshiyuki Yokoyama, Yoshitaka Sakamoto, Masahide Seki, Yutaka Suzuki, Masahiro Kasahara
Software Mentions: 8
Published: about 5 years ago

10.1186/s13059-021-02423-x

GRIDSS2: comprehensive characterisation of somatic structural variation using single breakend variants and structural variant phasing
Cited by: 58
Author(s): Daniel Cameron, Jonathan Baber, Charles Shale, Jose Espejo Valle-Inclán, Nicolle Besselink, Arne van Hoeck, Roel Janssen, Edwin Cuppen, Peter Priestley, Anthony T. Papenfuss
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0243609

MANTA, an integrative database and analysis platform that relates microbiome and phenotypic data
Cited by: 6
Author(s): Yi An Chen, Jonguk Park, Yayoi Natsume-Kitatani, Hitoshi Kawashima, Attayeb Mohsen, Koji Hosomi, Kumpei Tanisawa, Harumi Ohno, Kana Konishi, Haruka Murakami, Motohiko Miyachi, Jun Kunisawa, Kenji Mizuguchi
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13059-021-02380-5

Samplot: a platform for structural variant visual validation and automated filtering
Cited by: 40
Author(s): Jonathan R Belyeu, Murad Chowdhury, Joseph Brown, Brent S. Pedersen, Michael Cormier, Aaron R. Quinlan, Ryan M. Layer
Software Mentions: 5
Published: over 3 years ago

10.3390/genes11050499

Unmasking Intra-Tumoral Heterogeneity and Clonal Evolution in NF1-MPNST
Cited by: 2
Author(s): Chang In Moon, William Tompkins, Yuxi Wang, Abigail Godec, Xiaochun Zhang, Patrik Pipkorn, Christopher A. Miller, Carina Dehner, Sonika Dahiya, Angela C. Hirbe
Software Mentions: 5
Published: over 4 years ago

10.3389/fgene.2021.731515

PanSVR: Pan-Genome Augmented Short Read Realignment for Sensitive Detection of Structural Variations
Cited by: 1
Author(s): Gaoyang Li, Tao Jiang, Junyi Li, Yadong Wang
Software Mentions: 4
Published: over 3 years ago

10.3390/cancers13051126

Transformed Canine and Murine Mesenchymal Stem Cells as a Model for Sarcoma with Complex Genomics
Cited by: 5
Author(s): Natasja Franceschini, Bas Verbruggen, Marianna A. Tryfonidou, Alwine B. Kruisselbrink, Hans J. Baelde, Karin E. de Visser, Károly Szuhai, Anne‐Marie Cleton‐Jansen, Judith V.M.G. Bovée
Software Mentions: 4
Published: over 3 years ago

10.1186/s13059-016-1024-y

Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations
Cited by: 68
Author(s): Anthony Doran, Kim Wong, Jonathan Flint, David J. Adams, Kent W. Hunter, Thomas M. Keane
Software Mentions: 3
Published: over 8 years ago

10.1038/s41421-020-00231-4

Initial whole-genome sequencing and analysis of the host genetic contribution to COVID-19 severity and susceptibility
Cited by: 150
Author(s): Fang Wang, Shujia Huang, Rongsui Gao, Yuwen Zhou, Changxiang Lai, Zhichao Li, Wenjie Xian, Xiaobo Qian, Zhiyu Li, Yushan Huang, Qiyuan Tang, Panhong Liu, Ruikun Chen, Rong Liu, Xuan Li, Xin Tong, Xuan Zhou, Yong Bai, Gang Dong, Tao Zhang, Xun Xu, Jian Wang, Huanming Yang, Siyang Liu, Qin He, Xin Jin, Lei Liu
Software Mentions: 3
Published: about 4 years ago

10.1093/molbev/msab086

Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics
Cited by: 21
Author(s): Matthew J. Christmas, Julia C. Jones, Anna Olsson, Ola Wallerman, Ignas Bunikis, Marcin Kierczak, Valentina Peona, Kaitlyn M. Whitley, Tuuli Larva, Alexander Suh, Nicole E. Miller‐Struttmann, Jennifer C. Geib, Matthew T. Webster
Software Mentions: 2
Published: over 3 years ago

10.1002/mgg3.1398

Genetic profile of non‐small cell lung cancer (NSCLC): A hospital‐based survey in Jinhua
Cited by: 8
Author(s): Xianguo Chen, Bo Xu, Qiang Li, Xin Xu, Xianshuai Li, Xia You, Zhaonan Yu
Software Mentions: 2
Published: over 4 years ago

10.3390/s21165482

Precise Segmentation of COVID-19 Infected Lung from CT Images Based on Adaptive First-Order Appearance Model with Morphological/Anatomical Constraints
Cited by: 9
Author(s): Ahmed Sharafeldeen, Mohamed Elsharkawy, Norah Saleh Alghamdi, Ahmed Soliman, Ayman El-Baz
Software Mentions: 1
Published: over 3 years ago

10.1186/s13059-019-1648-9

Genomic analyses of an extensive collection of wild and cultivated accessions provide new insights into peach breeding history
Cited by: 106
Author(s): Yong Li, Ke Cao, Guoqiang Zhu, Weichao Fang, Chang Wen Chen, Xinwei Wang, Pei Zhao, Jian Guo, Tiyu Ding, Liping Guan, Qian Zhang, Wen‐Wu Guo, Zhangjun Fei, Lirong Wang
Software Mentions: 1
Published: almost 6 years ago