Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02423-x

https://doi.org/10.1186/s13059-021-02423-x

GRIDSS2: comprehensive characterisation of somatic structural variation using single breakend variants and structural variant phasing

Cited by: 58
Author(s): Daniel Cameron, Jonathan Baber, Charles Shale, Jose Espejo Valle-Inclán, Nicolle Besselink, Arne van Hoeck, Roel Janssen, Edwin Cuppen, Peter Priestley, Anthony T. Papenfuss
Published: over 3 years ago

Software Mentions 6

bioconductor: StructuralVariantAnnotation
Variant annotations for structural variants
Papers that mentioned: 2
cran: ART
Aligned Rank Transform for Nonparametric Factorial Analysis
Papers that mentioned: 580
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: manta
A Python SDK for Joyent's Manta service
Papers that mentioned: 14
pypi: NanoSV
Structural variation detection tool for Oxford Nanopore data.
Papers that mentioned: 14