Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: NanoSV
https://packages.ecosyste.ms/registries/pypi.org/packages/NanoSV
Structural variation detection tool for Oxford Nanopore data.
12 versions
Latest release: about 5 years ago
33 downloads last month
Papers Mentioning NanoSV 14
10.1186/s13059-021-02423-x
GRIDSS2: comprehensive characterisation of somatic structural variation using single breakend variants and structural variant phasingCited by: 58
Author(s): Daniel Cameron, Jonathan Baber, Charles Shale, Jose Espejo Valle-Inclán, Nicolle Besselink, Arne van Hoeck, Roel Janssen, Edwin Cuppen, Peter Priestley, Anthony T. Papenfuss
Software Mentions: 6
Published: over 3 years ago
10.1186/s13059-019-1858-1
Evaluating nanopore sequencing data processing pipelines for structural variation identificationCited by: 30
Author(s): Anbo Zhou, Timothy Lin, Jinchuan Xing
Software Mentions: 5
Published: about 5 years ago
10.1007/s00401-017-1743-5
Same-day genomic and epigenomic diagnosis of brain tumors using real-time nanopore sequencingCited by: 120
Author(s): Philipp Euskirchen, Franck Bielle, Karim Labreche, Wigard P. Kloosterman, Shai Rosenberg, Maïlys Daniau, Charlotte Schmitt, Julien Masliah‐Planchon, Franck Bourdeaut, Caroline Dehais, Yannick Marie, Jean‐Yves Delattre, Ahmed Idbaïh
Software Mentions: 4
Published: over 7 years ago
10.1186/s12915-020-00927-9
Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya sppCited by: 29
Author(s): Sarah Farhat, Phuong Thi Le, Ehsan Kayal, Benjamin Noël, Estelle Bigeard, Matthieu Le Corre, Florian Maumus, Isabelle Florent, Adriana Alberti, Jean‐Marc Aury, Tristan Barbeyron, Ruibo Cai, Corinne Da Silva, Benjamin Istace, Karine Labadie, Dominique Marie, Jonathan Mercier, Tsinda Rukwavu, Jeremy Szymczak, Thierry Tonon, Catharina Alves‐de‐Souza, Pierre Rouzé, Yves Van de Peer, Patrick Wincker, Stéphane Rombauts, Betina M. Porcel, Laure Guillou
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13073-018-0606-6
Complex structural variants in Mendelian disorders: identification and breakpoint resolution using short- and long-read genome sequencingCited by: 102
Author(s): Alba Sanchis‐Juan, Jonathan Stephens, Courtney French, Nicholas Gleadall, Karyn Mégy, Christopher J. Penkett, Olga Shamardina, Kathleen Stirrups, Isabelle Delon, Eleanor Dewhurst, Helen Dolling, Marie Erwood, Detelina Grozeva, Luca Stefanucci, Gavin Arno, Andrew R. Webster, Trevor Cole, Topun Austin, Ricardo Garcia Branco, Willem H. Ouwehand, F. Lucy Raymond, Keren Carss
Software Mentions: 3
Published: almost 6 years ago
10.1186/s13059-021-02382-3
Characterization of structural variation in Tibetans reveals new evidence of high-altitude adaptation and introgressionCited by: 29
Author(s): Qimin Cheng, Yuanfeng Li, Xinyi Liu, Yahui Wang, Jie Ping, Yiming Lu, Gangqiao Zhou
Software Mentions: 3
Published: over 3 years ago
10.1186/s12885-020-07571-0
Targeted nanopore sequencing for the identification of ABCB1 promoter translocations in cancerCited by: 6
Author(s): Mark S. Williams, Naseer J. Basma, Fabio Amaral, Gillian Williams, John Weightman, Wolfgang Breitwieser, Louisa Nelson, Stephen S. Taylor, Daniel H. Wiseman, Tim C. P. Somervaille
Software Mentions: 3
Published: about 4 years ago
10.1186/s13059-020-01968-7
NanoVar: accurate characterization of patients’ genomic structural variants using low-depth nanopore sequencingCited by: 53
Author(s): Cheng Yong Tham, Roberto Tirado-Magallanes, Yufen Goh, Melissa J. Fullwood, Bryan T. H. Koh, Wilson Wang, Chin Hin Ng, Wee Joo Chng, Alexandre H. Thiéry, Daniel G. Tenen, Touati Benoukraf
Software Mentions: 3
Published: over 4 years ago
10.1186/s13059-019-1828-7
Structural variant calling: the long and the short of itCited by: 346
Author(s): Medhat Mahmoud, Nastassia Gobet, Diana Ivette Cruz-Dávalos, Ninon Mounier, Christophe Dessimoz, Fritz J. Sedlazeck
Software Mentions: 2
Published: about 5 years ago
10.1186/s13073-020-00762-1
A pipeline for complete characterization of complex germline rearrangements from long DNA readsCited by: 21
Author(s): Satomi Mitsuhashi, Sachiko Ohori, Kazutaka Katoh, Martin C. Frith, Naomichi Matsumoto
Software Mentions: 2
Published: over 4 years ago
10.3389/fgene.2019.01313
Location of Balanced Chromosome-Translocation Breakpoints by Long-Read Sequencing on the Oxford Nanopore PlatformCited by: 27
Author(s): Liang Hu, Fan Liang, Dehua Cheng, Zhiyuan Zhang, Guoliang Yu, Jianjun Zha, Yan Wang, Xia Qi, Yuan Chun Ding, Yue‐Qiu Tan, Depeng Wang, Liang Yu, Ge Lin
Software Mentions: 1
Published: almost 5 years ago
10.1016/j.mex.2019.10.028
High-resolution mapping of reciprocal translocation breakpoints using long-read sequencingCited by: 5
Author(s): Judy F.C. Chow, Heidi H.Y. Cheng, Esther Yuet Ying Lau, William S.B. Yeung, Ernest H.Y. Ng
Software Mentions: 1
Published: almost 6 years ago
10.1186/s13073-021-00899-7
Optimizing Nanopore sequencing-based detection of structural variants enables individualized circulating tumor DNA-based disease monitoring in cancer patientsCited by: 13
Author(s): Jose Espejo Valle-Inclán, Christina Stangl, Anouk C. de Jong, Lisanne F. van Dessel, Markus J. van Roosmalen, Jean C. A. Helmijr, Ivo Renkens, Roel Janssen, Sam de Blank, Chris J. de Witte, John W.M. Martens, Maurice P.H.M. Jansen, Martijn P. Lolkema, Wigard P. Kloosterman
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.00159
Evaluating Structural Variation Detection Tools for Long-Read Sequencing Datasets in Saccharomyces cerevisiaeCited by: 12
Author(s): Meiwei Luan, Xiaoming Zhang, Zhaojie Zhu, Ying Chen, Shuang Xie
Software Mentions: 1
Published: over 4 years ago