Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fninf.2013.00052

https://doi.org/10.3389/fninf.2013.00052

A framework for streamlining research workflow in neuroscience and psychology

Cited by: 12
Author(s): Jonas Kubilius
Published: almost 11 years ago

Software Mentions 25

cran: argparse
Command Line Optional and Positional Argument Parser
Papers that mentioned: 20
cran: fmri
Analysis of fMRI Experiments
Papers that mentioned: 23
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
pypi: argparse
Python command-line parsing library
Papers that mentioned: 20
pypi: docutils
Docutils -- Python Documentation Utilities
Papers that mentioned: 1
pypi: ext
Monkey patching support for built-in types in CPython (3.x)
Papers that mentioned: 1
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: mlab
Mlab is a high-level python to Matlab bridge that lets Matlab look like a normal python library
Papers that mentioned: 1
pypi: nibabel
Access a multitude of neuroimaging data formats
Papers that mentioned: 15
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
pypi: PsychoPy
PsychoPy provides easy, precise, flexible experiments in behavioural sciences
Papers that mentioned: 691
pypi: psychopy_ext
A framework for a rapid reproducible experimental design, analysis and modeling of data in neuroscience and psychology.
Papers that mentioned: 3
pypi: Pweave
Scientific reports with embedded python computations with reST, LaTeX or markdown
Papers that mentioned: 2
pypi: py
library with cross-python path, ini-parsing, io, code, log facilities
Papers that mentioned: 403
pypi: pylit
pylit: bidirectional text <-> code converter
Papers that mentioned: 1
pypi: pymatlab
A pythonic interface to MATLAB
Papers that mentioned: 1
pypi: pymvpa2
Multivariate pattern analysis
Papers that mentioned: 1
pypi: pyreport
Pyreport makes notes out of a python script. It can run the script in a sandbox and capture its output. It allows for embedding RestructuredText or LaTeX comments in the code for literate programming and generates a report made of the literate comments, the code, pretty printed, and the output of the script (pyreport can capture pylab figures). This is useful for documentations, making tutorials, but also for sharing python-based calculations with colleagues.
Papers that mentioned: 1
pypi: rpy2
Python interface to the R language (embedded R)
Papers that mentioned: 40
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: statsmodels
Statistical computations and models for Python
Papers that mentioned: 277
pypi: Sumatra
A tool for automated tracking of computation-based scientific projects
Papers that mentioned: 8
pypi: wxPython
Cross platform GUI toolkit for Python, "Phoenix" version
Papers that mentioned: 48