Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: rpy2
https://packages.ecosyste.ms/registries/pypi.org/packages/rpy2
Python interface to the R language (embedded R)
116 versions
Latest release: about 1 year ago
139 dependent packages
621,301 downloads last month
Papers Mentioning rpy2 40
10.3389/fninf.2013.00052
A framework for streamlining research workflow in neuroscience and psychologyCited by: 12
Author(s): Jonas Kubilius
Software Mentions: 25
Published: almost 11 years ago
10.1186/s13072-016-0095-z
EpiMINE, a computational program for mining epigenomic dataCited by: 11
Author(s): Sri Ganesh Jammula, Diego Pasini
Software Mentions: 23
Published: about 8 years ago
10.1038/s42003-021-01941-5
CENP-A overexpression promotes distinct fates in human cells, depending on p53 statusCited by: 23
Author(s): Daniel Jeffery, Alberto Gatto, Katrina Podsypanina, Charlène Renaud-Pageot, Rebeca Ponce Landete, Lorraine Bonneville, Marie Dumont, Daniele Fachinetti, Geneviève Almouzni
Software Mentions: 12
Published: over 3 years ago
10.3389/fgene.2019.00981
CircCode: A Powerful Tool for Identifying circRNA Coding AbilityCited by: 49
Author(s): Peisen Sun, Guanglin Li
Software Mentions: 9
Published: about 5 years ago
10.1186/1471-2105-11-S12-S11
An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translatorsCited by: 10
Author(s): Laurent Gautier
Software Mentions: 9
Published: almost 14 years ago
10.1186/s12859-020-03641-z
A rank-based marker selection method for high throughput scRNA-seq dataCited by: 23
Author(s): Alexander Vargo, Anna C. Gilbert
Software Mentions: 8
Published: about 4 years ago
10.1186/1471-2180-14-171
Colony-live — a high-throughput method for measuring microbial colony growth kinetics— reveals diverse growth effects of gene knockouts in Escherichia coliCited by: 38
Author(s): Rikiya Takeuchi, Takeyuki Tamura, Toru Nakayashiki, Yuzo Tanaka, Ai Muto, Barry L. Wanner, Hirotada Mori
Software Mentions: 7
Published: over 10 years ago
10.1186/gb-2011-12-6-r60
Metagenomic biomarker discovery and explanationCited by: 9,402
Author(s): Nicola Segata, Jacques Izard, Levi Waldron, Dirk Gevers, Larisa Miropolsky, Wendy S. Garrett, Curtis Huttenhower
Software Mentions: 7
Published: almost 14 years ago
10.3389/fimmu.2021.665312
An IRF1-IRF4 Toggle-Switch Controls Tolerogenic and Immunogenic Transcriptional Programming in Human Langerhans CellsCited by: 8
Author(s): James Davies, Andrés F. Vallejo, Sofía Sirvent, Gemma Porter, Kalum Clayton, Yamkela Qumbelo, Patrick S. Stumpf, Jonathan West, Clive M. Gray, Nyaradzo T. L. Chigorimbo‐Murefu, Ben D. MacArthur, Marta E. Polak
Software Mentions: 7
Published: over 3 years ago
10.3389/fnhum.2017.00454
Cold-Blooded Attention: Finger Temperature Predicts Attentional PerformanceCited by: 5
Author(s): Rodrigo C. Vergara, Cristóbal Moënne‐Loccoz, Pedro Maldonado
Software Mentions: 7
Published: about 7 years ago
10.1371/journal.pone.0207967
Lateral ventricle volume trajectories predict response inhibition in older age—A longitudinal brain imaging and machine learning approachCited by: 11
Author(s): Astri J. Lundervold, Alexandra Vik
Software Mentions: 6
Published: over 5 years ago
10.1186/s13014-020-01683-4
Prostate cancer tumour control probability modelling for external beam radiotherapy based on multi-parametric MRI-GTV definitionCited by: 6
Author(s): Ilias Sachpazidis, Panayiotis Mavroidis, Constantinos Zamboglou, Christina Marie Klein, Anca‐Ligia Grosu, Dimos Baltas
Software Mentions: 6
Published: about 4 years ago
10.1523/ENEURO.0315-18.2018
What, If Anything, Is Rodent Prefrontal Cortex?Cited by: 271
Author(s): Mark Laubach, Linda M. Amarante, Tom Swanson, Samantha R. White
Software Mentions: 6
Published: about 6 years ago
10.3389/fmicb.2015.01038
Turbulence-driven shifts in holobionts and planktonic microbial assemblages in St. Peter and St. Paul Archipelago, Mid-Atlantic Ridge, BrazilCited by: 10
Author(s): Ana Paula B. Moreira, Pedro Milet Meirelles, Eidy de Oliveira Santos, Gilberto M. Amado‐Filho, Ronaldo B. Francini‐Filho, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 6
Published: about 9 years ago
10.1038/s41598-017-15695-w
Objective quantification of nanoscale protein distributionsCited by: 15
Author(s): Miklos Szoboszlay, Tekla Kirizs, Zoltán Nusser
Software Mentions: 6
Published: almost 7 years ago
10.1007/s00401-020-02228-5
Mosaic trisomy of chromosome 1q in human brain tissue associates with unilateral polymicrogyria, very early-onset focal epilepsy, and severe developmental delayCited by: 27
Author(s): Katja Kobow, Samir Jabari, Tom Pieper, Manfred Kudernatsch, Tilman Polster, Friedrich G. Woermann, Thilo Kalbhenn, Hajo M. Hamer, Karl Rössler, Angelika Mühlebner, Wim G.M. Spliet, Martha Feucht, Yanghao Hou, Damian Stichel, Andrey Korshunov, Felix Sahm, Roland Coras, Ingmar Blümcke, Andreas von Deimling
Software Mentions: 5
Published: about 4 years ago
10.1371/journal.pone.0188310
Inattention in primary school is not good for your future school achievement—A pattern classification studyCited by: 8
Author(s): Astri J. Lundervold, Tormod Bøe
Software Mentions: 5
Published: almost 7 years ago
10.1093/gigascience/giy109
Fractalis: a scalable open-source service for platform-independent interactive visual analysis of biomedical dataCited by: 3
Author(s): Sascha Herzinger, Valentin Grouès, Wei Gu, Venkata Satagopam, Peter Banda, Christophe Trefois, Reinhard Schneider
Software Mentions: 5
Published: about 6 years ago
10.1038/s41598-017-12559-1
The neural representation of personally familiar and unfamiliar faces in the distributed system for face perceptionCited by: 75
Author(s): Matteo Visconti di Oleggio Castello, Yaroslav O. Halchenko, J. Swaroop Guntupalli, Jason Gors, M. Ida Gobbini
Software Mentions: 5
Published: about 7 years ago
10.7717/peerj.10558
HiCEnterprise: identifying long range chromosomal contacts in Hi-C dataCited by: 1
Author(s): Hanna Kranas, Irina Tuszyńska, Bartek Wilczyński
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2020.610798
State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and SharingCited by: 140
Author(s): Michal Krassowski, Vivek Das, Shivani Sahu, Biswapriya B. Misra
Software Mentions: 4
Published: almost 4 years ago
10.1093/gigascience/gix061
A recurrence-based approach for validating structural variation using long-read sequencing technologyCited by: 20
Author(s): Xuefang Zhao, Alexandra M. Weber, Ryan E. Mills
Software Mentions: 4
Published: over 7 years ago
10.7554/eLife.63372
Coherent theta activity in the medial and orbital frontal cortices encodes reward valueCited by: 11
Author(s): Linda M. Amarante, Mark Laubach
Software Mentions: 4
Published: about 3 years ago
10.1186/s12859-020-03551-0
ARTDeco: automatic readthrough transcription detectionCited by: 15
Author(s): Samuel J. Roth, Sven Heinz, Christopher Benner
Software Mentions: 4
Published: over 4 years ago
10.1186/s12859-016-1355-4
SPECtre: a spectral coherence-based classifier of actively translated transcripts from ribosome profiling sequence dataCited by: 40
Author(s): Sang-Young Chun, Caitlin M. Rodriguez, Peter K. Todd, Ryan E. Mills
Software Mentions: 4
Published: almost 8 years ago
10.3389/fmicb.2020.555306
Copper Homeostasis in Aspergillus nidulans Involves Coordinated Transporter Function, Expression and Cellular DynamicsCited by: 4
Author(s): Martzel Antsotegi-Uskola, Ane Markina-Iñarrairaegui, Unai Ugalde
Software Mentions: 3
Published: almost 4 years ago
10.1186/s12902-016-0140-8
Gastric bypass surgery reveals independency of obesity and diabetes melitus type 2Cited by: 8
Author(s): Mogens Fenger, Dorte L. Hansen, Dorte Worm, Lisbeth E. Hvolris, Viggo B. Kristiansen, Elin Rebecka Carlsson, Sten Madsbad
Software Mentions: 3
Published: almost 8 years ago
10.3389/fnana.2017.00021
Computational Model of Recurrent Subthalamo-Pallidal Circuit for Generation of Parkinsonian OscillationsCited by: 34
Author(s): Osamu Saito, Yoshihisa Tachibana, Atsushi Nambu, Kenji Doya
Software Mentions: 2
Published: over 7 years ago
10.1186/1471-2148-11-311
A Bayesian framework to estimate diversification rates and their variation through time and spaceCited by: 89
Author(s): Daniele Silvestro, Jan Schnitzler, Georg Zizka
Software Mentions: 2
Published: almost 14 years ago
10.1038/s41598-020-69134-4
Optical mapping of the 22q11.2DS region reveals complex repeat structures and preferred locations for non-allelic homologous recombination (NAHR)Cited by: 18
Author(s): Steven Pastor, Oanh Tran, Andrea Jin, Danielle Carrado, Benjamin A. Silva, Lahari Uppuluri, Heba Z. Abid, Eleanor Young, T. Blaine Crowley, Alice Bailey, Daniel McGinn, Donna M. McDonald‐McGinn, Elaine H. Zackai, Michael Xie, Deanne Taylor, Bernice E. Morrow, Ming Xiao, Beverly S. Emanuel
Software Mentions: 2
Published: over 4 years ago
10.7554/eLife.32838
MELK expression correlates with tumor mitotic activity but is not required for cancer growthCited by: 62
Author(s): Christopher J. Giuliano, Andy Lin, John K. Smith, Ann Palladino, Jason M. Sheltzer
Software Mentions: 2
Published: over 6 years ago
10.1098/rsos.150274
Predicting the outcome of competition when fitness inequality is variableCited by: 9
Author(s): Michael T. Pedruski, Gregor F. Fussmann, Andrew Gonzalez
Software Mentions: 2
Published: over 9 years ago
10.1186/1471-2334-14-136
How should social mixing be measured: comparing web-based survey and sensor-based methodsCited by: 62
Author(s): Timo Smieszek, Victoria C Barclay, Indulaxmi Seeni, Jeanette J. Rainey, Hongjiang Gao, Amra Uzicanin, Marcel Salathé
Software Mentions: 2
Published: over 10 years ago
10.1038/srep35340
Label-free in vivo analysis of intracellular lipid droplets in the oleaginous microalga Monoraphidium neglectum by coherent Raman scattering microscopyCited by: 31
Author(s): Daniel Jaeger, Christian Pilger, Henning Hachmeister, Elina Oberländer, Robin Wördenweber, Julian Wichmann, Jan H. Mussgnug, Thomas Huser, Olaf Kruse
Software Mentions: 2
Published: about 8 years ago
10.1074/mcp.M117.068007
pyQms enables universal and accurate quantification of mass spectrometry dataCited by: 16
Author(s): Johannes Leufken, Anna Niehues, L. Peter Sarin, Florian Wessel, Michael Hippler, Sebastian A. Leidel, Christian Fufezan
Software Mentions: 2
Published: about 7 years ago
10.1186/s12864-017-3541-9
An approach of identifying differential nucleosome regions in multiple samplesCited by: 8
Author(s): Lingjie Liu, Jingjing Xie, Xiao Sun, Kun Luo, Zhaohui S. Qin, Hongde Liu
Software Mentions: 2
Published: over 7 years ago
10.1186/1753-6561-7-S7-S2
Conceptualization of molecular findings by mining gene annotationsCited by: 4
Author(s): Vicky Chen, Xinghua Lu
Software Mentions: 1
Published: almost 11 years ago
10.1128/MRA.00314-21
webSalvador: a Web Tool for the Luria-Delbrük ExperimentCited by: 2
Author(s): Qi Zheng
Software Mentions: 1
Published: over 3 years ago
10.1186/s13148-021-01026-4
Association of expression of epigenetic molecular factors with DNA methylation and sensitivity to chemotherapeutic agents in cancer cell linesCited by: 13
Author(s): Suleyman Vural, Alida Palmisano, William C. Reinhold, Yves Pommier, Beverly A. Teicher, Julia Krushkal
Software Mentions: 1
Published: over 3 years ago
10.1016/j.patter.2020.100019
Cross-Modal Data Programming Enables Rapid Medical Machine LearningCited by: 37
Author(s): Jared Dunnmon, Alexander Ratner, Khaled Saab, Nishith Khandwala, Matthew Markert, Hersh Sagreiya, Roger E. Goldman, Christopher Lee‐Messer, Matthew P. Lungren, Daniel L. Rubin, Christopher Ré
Software Mentions: 1
Published: over 4 years ago