pypi: rpy2 | Projects | Ecosyste.ms: Papers

10.3389/fninf.2013.00052

A framework for streamlining research workflow in neuroscience and psychology
Cited by: 12
Author(s): Jonas Kubilius
Software Mentions: 25
Published: almost 11 years ago

10.1186/s13072-016-0095-z

EpiMINE, a computational program for mining epigenomic data
Cited by: 11
Author(s): Sri Ganesh Jammula, Diego Pasini
Software Mentions: 23
Published: about 8 years ago

CENP-A overexpression promotes distinct fates in human cells, depending on p53 status
Cited by: 23
Author(s): Daniel Jeffery, Alberto Gatto, Katrina Podsypanina, Charlène Renaud-Pageot, Rebeca Ponce Landete, Lorraine Bonneville, Marie Dumont, Daniele Fachinetti, Geneviève Almouzni
Software Mentions: 12
Published: over 3 years ago

10.3389/fgene.2019.00981

CircCode: A Powerful Tool for Identifying circRNA Coding Ability
Cited by: 49
Author(s): Peisen Sun, Guanglin Li
Software Mentions: 9
Published: about 5 years ago

10.1186/1471-2105-11-S12-S11

An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators
Cited by: 10
Author(s): Laurent Gautier
Software Mentions: 9
Published: almost 14 years ago

10.1186/s12859-020-03641-z

A rank-based marker selection method for high throughput scRNA-seq data
Cited by: 23
Author(s): Alexander Vargo, Anna C. Gilbert
Software Mentions: 8
Published: about 4 years ago

10.1186/1471-2180-14-171

Colony-live — a high-throughput method for measuring microbial colony growth kinetics— reveals diverse growth effects of gene knockouts in Escherichia coli
Cited by: 38
Author(s): Rikiya Takeuchi, Takeyuki Tamura, Toru Nakayashiki, Yuzo Tanaka, Ai Muto, Barry L. Wanner, Hirotada Mori
Software Mentions: 7
Published: over 10 years ago

10.1186/gb-2011-12-6-r60

Metagenomic biomarker discovery and explanation
Cited by: 9,402
Author(s): Nicola Segata, Jacques Izard, Levi Waldron, Dirk Gevers, Larisa Miropolsky, Wendy S. Garrett, Curtis Huttenhower
Software Mentions: 7
Published: almost 14 years ago

10.3389/fimmu.2021.665312

An IRF1-IRF4 Toggle-Switch Controls Tolerogenic and Immunogenic Transcriptional Programming in Human Langerhans Cells
Cited by: 8
Author(s): James Davies, Andrés F. Vallejo, Sofía Sirvent, Gemma Porter, Kalum Clayton, Yamkela Qumbelo, Patrick S. Stumpf, Jonathan West, Clive M. Gray, Nyaradzo T. L. Chigorimbo‐Murefu, Ben D. MacArthur, Marta E. Polak
Software Mentions: 7
Published: over 3 years ago

10.3389/fnhum.2017.00454

Cold-Blooded Attention: Finger Temperature Predicts Attentional Performance
Cited by: 5
Author(s): Rodrigo C. Vergara, Cristóbal Moënne‐Loccoz, Pedro Maldonado
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pone.0207967

Lateral ventricle volume trajectories predict response inhibition in older age—A longitudinal brain imaging and machine learning approach
Cited by: 11
Author(s): Astri J. Lundervold, Alexandra Vik
Software Mentions: 6
Published: over 5 years ago

10.1186/s13014-020-01683-4

Prostate cancer tumour control probability modelling for external beam radiotherapy based on multi-parametric MRI-GTV definition
Cited by: 6
Author(s): Ilias Sachpazidis, Panayiotis Mavroidis, Constantinos Zamboglou, Christina Marie Klein, Anca‐Ligia Grosu, Dimos Baltas
Software Mentions: 6
Published: about 4 years ago

10.1523/ENEURO.0315-18.2018

What, If Anything, Is Rodent Prefrontal Cortex?
Cited by: 271
Author(s): Mark Laubach, Linda M. Amarante, Tom Swanson, Samantha R. White
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2015.01038

Turbulence-driven shifts in holobionts and planktonic microbial assemblages in St. Peter and St. Paul Archipelago, Mid-Atlantic Ridge, Brazil
Cited by: 10
Author(s): Ana Paula B. Moreira, Pedro Milet Meirelles, Eidy de Oliveira Santos, Gilberto M. Amado‐Filho, Ronaldo B. Francini‐Filho, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 6
Published: about 9 years ago

10.1038/s41598-017-15695-w

Objective quantification of nanoscale protein distributions
Cited by: 15
Author(s): Miklos Szoboszlay, Tekla Kirizs, Zoltán Nusser
Software Mentions: 6
Published: about 7 years ago

10.1007/s00401-020-02228-5

Mosaic trisomy of chromosome 1q in human brain tissue associates with unilateral polymicrogyria, very early-onset focal epilepsy, and severe developmental delay
Cited by: 27
Author(s): Katja Kobow, Samir Jabari, Tom Pieper, Manfred Kudernatsch, Tilman Polster, Friedrich G. Woermann, Thilo Kalbhenn, Hajo M. Hamer, Karl Rössler, Angelika Mühlebner, Wim G.M. Spliet, Martha Feucht, Yanghao Hou, Damian Stichel, Andrey Korshunov, Felix Sahm, Roland Coras, Ingmar Blümcke, Andreas von Deimling
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0188310

Inattention in primary school is not good for your future school achievement—A pattern classification study
Cited by: 8
Author(s): Astri J. Lundervold, Tormod Bøe
Software Mentions: 5
Published: almost 7 years ago

10.1093/gigascience/giy109

Fractalis: a scalable open-source service for platform-independent interactive visual analysis of biomedical data
Cited by: 3
Author(s): Sascha Herzinger, Valentin Grouès, Wei Gu, Venkata Satagopam, Peter Banda, Christophe Trefois, Reinhard Schneider
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-017-12559-1

The neural representation of personally familiar and unfamiliar faces in the distributed system for face perception
Cited by: 75
Author(s): Matteo Visconti di Oleggio Castello, Yaroslav O. Halchenko, J. Swaroop Guntupalli, Jason Gors, M. Ida Gobbini
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.10558

HiCEnterprise: identifying long range chromosomal contacts in Hi-C data
Cited by: 1
Author(s): Hanna Kranas, Irina Tuszyńska, Bartek Wilczyński
Software Mentions: 4
Published: over 3 years ago

10.3389/fgene.2020.610798

State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing
Cited by: 140
Author(s): Michal Krassowski, Vivek Das, Shivani Sahu, Biswapriya B. Misra
Software Mentions: 4
Published: almost 4 years ago

10.1093/gigascience/gix061

A recurrence-based approach for validating structural variation using long-read sequencing technology
Cited by: 20
Author(s): Xuefang Zhao, Alexandra M. Weber, Ryan E. Mills
Software Mentions: 4
Published: over 7 years ago

10.7554/eLife.63372

Coherent theta activity in the medial and orbital frontal cortices encodes reward value
Cited by: 11
Author(s): Linda M. Amarante, Mark Laubach
Software Mentions: 4
Published: about 3 years ago

10.1186/s12859-020-03551-0

ARTDeco: automatic readthrough transcription detection
Cited by: 15
Author(s): Samuel J. Roth, Sven Heinz, Christopher Benner
Software Mentions: 4
Published: over 4 years ago

10.1186/s12859-016-1355-4

SPECtre: a spectral coherence-based classifier of actively translated transcripts from ribosome profiling sequence data
Cited by: 40
Author(s): Sang-Young Chun, Caitlin M. Rodriguez, Peter K. Todd, Ryan E. Mills
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2020.555306

Copper Homeostasis in Aspergillus nidulans Involves Coordinated Transporter Function, Expression and Cellular Dynamics
Cited by: 4
Author(s): Martzel Antsotegi-Uskola, Ane Markina-Iñarrairaegui, Unai Ugalde
Software Mentions: 3
Published: about 4 years ago

10.1186/s12902-016-0140-8

Gastric bypass surgery reveals independency of obesity and diabetes melitus type 2
Cited by: 8
Author(s): Mogens Fenger, Dorte L. Hansen, Dorte Worm, Lisbeth E. Hvolris, Viggo B. Kristiansen, Elin Rebecka Carlsson, Sten Madsbad
Software Mentions: 3
Published: about 8 years ago

10.3389/fnana.2017.00021

Computational Model of Recurrent Subthalamo-Pallidal Circuit for Generation of Parkinsonian Oscillations
Cited by: 34
Author(s): Osamu Saito, Yoshihisa Tachibana, Atsushi Nambu, Kenji Doya
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2148-11-311

A Bayesian framework to estimate diversification rates and their variation through time and space
Cited by: 89
Author(s): Daniele Silvestro, Jan Schnitzler, Georg Zizka
Software Mentions: 2
Published: almost 14 years ago

10.1038/s41598-020-69134-4

Optical mapping of the 22q11.2DS region reveals complex repeat structures and preferred locations for non-allelic homologous recombination (NAHR)
Cited by: 18
Author(s): Steven Pastor, Oanh Tran, Andrea Jin, Danielle Carrado, Benjamin A. Silva, Lahari Uppuluri, Heba Z. Abid, Eleanor Young, T. Blaine Crowley, Alice Bailey, Daniel McGinn, Donna M. McDonald‐McGinn, Elaine H. Zackai, Michael Xie, Deanne Taylor, Bernice E. Morrow, Ming Xiao, Beverly S. Emanuel
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.32838

MELK expression correlates with tumor mitotic activity but is not required for cancer growth
Cited by: 62
Author(s): Christopher J. Giuliano, Andy Lin, John K. Smith, Ann Palladino, Jason M. Sheltzer
Software Mentions: 2
Published: almost 7 years ago

10.1098/rsos.150274

Predicting the outcome of competition when fitness inequality is variable
Cited by: 9
Author(s): Michael T. Pedruski, Gregor F. Fussmann, Andrew Gonzalez
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2334-14-136

How should social mixing be measured: comparing web-based survey and sensor-based methods
Cited by: 62
Author(s): Timo Smieszek, Victoria C Barclay, Indulaxmi Seeni, Jeanette J. Rainey, Hongjiang Gao, Amra Uzicanin, Marcel Salathé
Software Mentions: 2
Published: over 10 years ago

10.1038/srep35340

Label-free in vivo analysis of intracellular lipid droplets in the oleaginous microalga Monoraphidium neglectum by coherent Raman scattering microscopy
Cited by: 31
Author(s): Daniel Jaeger, Christian Pilger, Henning Hachmeister, Elina Oberländer, Robin Wördenweber, Julian Wichmann, Jan H. Mussgnug, Thomas Huser, Olaf Kruse
Software Mentions: 2
Published: about 8 years ago

10.1074/mcp.M117.068007

pyQms enables universal and accurate quantification of mass spectrometry data
Cited by: 16
Author(s): Johannes Leufken, Anna Niehues, L. Peter Sarin, Florian Wessel, Michael Hippler, Sebastian A. Leidel, Christian Fufezan
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-017-3541-9

An approach of identifying differential nucleosome regions in multiple samples
Cited by: 8
Author(s): Lingjie Liu, Jingjing Xie, Xiao Sun, Kun Luo, Zhaohui S. Qin, Hongde Liu
Software Mentions: 2
Published: almost 8 years ago

10.1186/1753-6561-7-S7-S2

Conceptualization of molecular findings by mining gene annotations
Cited by: 4
Author(s): Vicky Chen, Xinghua Lu
Software Mentions: 1
Published: almost 11 years ago

10.1128/MRA.00314-21

webSalvador: a Web Tool for the Luria-Delbrük Experiment
Cited by: 2
Author(s): Qi Zheng
Software Mentions: 1
Published: over 3 years ago

10.1186/s13148-021-01026-4

Association of expression of epigenetic molecular factors with DNA methylation and sensitivity to chemotherapeutic agents in cancer cell lines
Cited by: 13
Author(s): Suleyman Vural, Alida Palmisano, William C. Reinhold, Yves Pommier, Beverly A. Teicher, Julia Krushkal
Software Mentions: 1
Published: over 3 years ago

10.1016/j.patter.2020.100019

Cross-Modal Data Programming Enables Rapid Medical Machine Learning
Cited by: 37
Author(s): Jared Dunnmon, Alexander Ratner, Khaled Saab, Nishith Khandwala, Matthew Markert, Hersh Sagreiya, Roger E. Goldman, Christopher Lee‐Messer, Matthew P. Lungren, Daniel L. Rubin, Christopher Ré
Software Mentions: 1
Published: over 4 years ago

Projects: pypi: rpy2

Papers Mentioning rpy2 40