Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2105-11-S12-S11

https://doi.org/10.1186/1471-2105-11-S12-S11

An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators

Cited by: 10
Author(s): Laurent Gautier
Published: about 14 years ago

Software Mentions 9

bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: goseq
Gene Ontology analyser for RNA-seq and other length biased data
Papers that mentioned: 132
pypi: bx-python
Tools for manipulating biological data, particularly multiple sequence alignments
Papers that mentioned: 10
pypi: geoquery

Papers that mentioned: 3
pypi: ggtools
A package to handle the GRACE and GRACE-FO GSM data and GLDAS grid data
Papers that mentioned: 1
pypi: Plone
The Plone Content Management System
Papers that mentioned: 8
pypi: pygr
Pygr, a Python graph-database toolkit oriented primarily on bioinformatics applications
Papers that mentioned: 2
pypi: rpy2
Python interface to the R language (embedded R)
Papers that mentioned: 40