Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: bx-python

https://packages.ecosyste.ms/registries/pypi.org/packages/bx-python

Tools for manipulating biological data, particularly multiple sequence alignments
19 versions
Latest release: over 1 year ago
11 dependent packages
56,541 downloads last month

Papers Mentioning bx-python 10

10.1186/s12864-016-3278-x
Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data
Cited by: 131
Author(s): Joshua G. Dunn, Jonathan S. Weissman
Software Mentions: 14
Published: almost 8 years ago
10.1186/1471-2105-11-S12-S11
An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators
Cited by: 10
Author(s): Laurent Gautier
Software Mentions: 9
Published: almost 14 years ago
10.1186/s12859-016-1274-4
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline
Cited by: 95
Author(s): Qian Qin, Shenglin Mei, Qiu Liang Wu, Hanfei Sun, Lewyn Li, Len Taing, Sujun Chen, Fugen Li, Tao Liu, Chongzhi Zang, Xu Han, Yiwen Chen, Clifford A. Meyer, Yong Zhang, Myles Brown, Henry W. Long, X. Shirley Liu
Software Mentions: 7
Published: about 8 years ago
10.1186/s12859-020-03551-0
ARTDeco: automatic readthrough transcription detection
Cited by: 15
Author(s): Samuel J. Roth, Sven Heinz, Christopher Benner
Software Mentions: 4
Published: over 4 years ago
10.1093/gbe/evt199
The Standing Pool of Genomic Structural Variation in a Natural Population of Mimulus guttatus
Cited by: 40
Author(s): Lex E. Flagel, John H. Willis
Software Mentions: 3
Published: almost 11 years ago
10.1038/sdata.2015.11
Sequence variants from whole genome sequencing a large group of Icelanders
Cited by: 60
Author(s): Daníel F. Guðbjartsson, Patrick Sulem, Hannes Helgason, Arnaldur Gylfason, Sigurjon A. Gudjonsson, Florian Zink, Asmundur Oddson, Gísli Magnússon, Bjarni V. Halldórsson, Eirikur Hjartarson, Gunnar Sigurðsson, Augustine Kong, Agnar Helgason, Gísli Másson, Ólafur Þ. Magnússon, Unnur Þorsteinsdóttir, Kāri Stefánsson
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pgen.1005579
Inter-population Differences in Retrogene Loss and Expression in Humans
Cited by: 11
Author(s): Michał Kabza, Magdalena Regina Kubiak, Agnieszka Danek, Wojciech Rosikiewicz, Sebastian Deorowicz, Andrzej Polański, Izabela Makałowska
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pntd.0007297
Genetic changes associated with the temporal shift in invasive non-typhoidal Salmonella serovars in Bamako Mali
Cited by: 4
Author(s): Kristin Bornstein, Sharon M. Tennant, Tracy H. Hazen, John D. Sorkin, Milagritos D. Tapia, Samba O. Sow, Uma Onwuchekwa, Myron M. Levine, David A. Rasko
Software Mentions: 2
Published: over 5 years ago
10.3389/fcimb.2012.00133
Comparative Genomics and stx Phage Characterization of LEE-Negative Shiga Toxin-Producing Escherichia coli
Cited by: 81
Author(s): Susan R. Steyert, Jason W. Sahl, Claire M. Fraser, Louise D. Teel, Flemming Scheutz, David A. Rasko
Software Mentions: 1
Published: almost 13 years ago