Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12864-016-3278-x
https://doi.org/10.1186/s12864-016-3278-x
Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data
Cited by: 131
Author(s): Joshua G. Dunn, Jonathan S. Weissman
Published: about 8 years ago
Software Mentions 14
bioconductor: riboSeqR
Analysis of sequencing data from ribosome profiling experimentsPapers that mentioned: 7
pypi: bx-python
Tools for manipulating biological data, particularly multiple sequence alignmentsPapers that mentioned: 10
pypi: cs
A simple yet powerful CloudStack API client for Python and the command-line.Papers that mentioned: 6
pypi: Cython
The Cython compiler for writing C extensions in the Python language.Papers that mentioned: 118
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assaysPapers that mentioned: 3,071
pypi: pandas
Powerful data structures for data analysis, time series, and statisticsPapers that mentioned: 640
pypi: Pygments
Pygments is a syntax highlighting package written in Python.Papers that mentioned: 1
pypi: twobitreader
A fast python package for reading .2bit files (used by the UCSC genome browser)Papers that mentioned: 2