Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: riboSeqR

https://packages.ecosyste.ms/registries/bioconductor.org/packages/riboSeqR

Analysis of sequencing data from ribosome profiling experiments
1 version
Latest release: 12 months ago
15,475 downloads total

Papers Mentioning riboSeqR 7

10.1186/s12864-016-3278-x

Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data
Cited by: 131
Author(s): Joshua G. Dunn, Jonathan S. Weissman
Software Mentions: 14
Published: almost 8 years ago

10.1186/s12864-019-5700-7

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data
Cited by: 14
Author(s): Patrick Perkins, Serina Mazzoni-Putman, Anna N. Stepanova, José M. Alonso, Steffen Heber
Software Mentions: 13
Published: over 5 years ago

10.7554/eLife.34409

General decapping activators target different subsets of inefficiently translated mRNAs
Cited by: 40
Author(s): Feng He, Alper Çelik, Chan Wu, Allan Jacobson
Software Mentions: 12
Published: almost 6 years ago

10.1186/s13007-021-00791-w

Small-scale sequencing enables quality assessment of Ribo-Seq data: an example from Arabidopsis cell culture
Cited by: 3
Author(s): Amir Mahboubi, Nicolas Delhomme, Sara Lea Häggström, Johannes Hanson
Software Mentions: 7
Published: about 3 years ago

10.12688/f1000research.8964.1

RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing
Cited by: 58
Author(s): Alexandra Popa, Kévin Lebrigand, Agnès Paquet, Nicolas Nottet, Karine Robbe-Sermesant, Rainer Waldmann, Pascal Barbry
Software Mentions: 6
Published: over 8 years ago

10.26508/lsa.201800124

Distinctive features of lincRNA gene expression suggest widespread RNA-independent functions
Cited by: 33
Author(s): Alex Tuck, Kedar Nath Natarajan, Greggory M. Rice, Jason Borawski, Fabio Mohn, Aneliya Rankova, Matyáš Flemr, Alice Wenger, Razvan Nutiu, Sarah A. Teichmann, Marc Bühler
Software Mentions: 3
Published: about 6 years ago

10.1074/jbc.RA118.006865

Translational regulation contributes to the secretory response of chondrocytic cells following exposure to interleukin-1β
Cited by: 10
Author(s): B.T. McDermott, Mandy J. Peffers, Brian McDonagh, Simon R. Tew
Software Mentions: 2
Published: about 5 years ago