Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13007-021-00791-w

https://doi.org/10.1186/s13007-021-00791-w

Small-scale sequencing enables quality assessment of Ribo-Seq data: an example from Arabidopsis cell culture

Cited by: 3
Author(s): Amir Mahboubi, Nicolas Delhomme, Sara Lea Häggström, Johannes Hanson
Published: about 3 years ago

Software Mentions 7

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: riboSeqR
Analysis of sequencing data from ribosome profiling experiments
Papers that mentioned: 7
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: browser
A package to prevent Dependency Confusion attacks against Yandex.
Papers that mentioned: 2,125
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307