Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-019-5700-7

https://doi.org/10.1186/s12864-019-5700-7

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data

Cited by: 14
Author(s): Patrick Perkins, Serina Mazzoni-Putman, Anna N. Stepanova, José M. Alonso, Steffen Heber
Published: over 5 years ago

Software Mentions 13

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: RiboProfiling
Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation
Papers that mentioned: 11
bioconductor: riboSeqR
Analysis of sequencing data from ribosome profiling experiments
Papers that mentioned: 7
bioconductor: systemPipeR
systemPipeR: workflow management and report generation environment
Papers that mentioned: 27
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: grid
Volumetric data module
Papers that mentioned: 137
pypi: plastid
Tools for analysis of genomics & sequencing data
Papers that mentioned: 3
pypi: RUST
Unit step transformation of Ribo-Seq data
Papers that mentioned: 20