Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.34409

https://doi.org/10.7554/eLife.34409

Cited by: 40
Author(s): Feng He, Alper Çelik, Chan Wu, Allan Jacobson
Published: over 5 years ago

Software Mentions 12

bioconductor: BiocParallel

Bioconductor facilities for parallel evaluation
Papers that mentioned: 30

bioconductor: Biostrings

Efficient manipulation of biological strings
Papers that mentioned: 220

bioconductor: riboSeqR

Analysis of sequencing data from ribosome profiling experiments
Papers that mentioned: 7

cran: doParallel

Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: gplots

Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122

cran: gridExtra

Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298

cran: plyr

Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468

cran: reshape2

Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421

pypi: bowtie

Interactive Dashboard Toolkit.
Papers that mentioned: 1,566

pypi: cutadapt

Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562

pypi: plyr

UNKNOWN
Papers that mentioned: 468