Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-016-1355-4

https://doi.org/10.1186/s12859-016-1355-4

SPECtre: a spectral coherence-­based classifier of actively translated transcripts from ribosome profiling sequence data

Cited by: 40
Author(s): Sang-Young Chun, Caitlin M. Rodriguez, Peter K. Todd, Ryan E. Mills
Published: almost 8 years ago

Software Mentions 4

pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: pyfasta
fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
Papers that mentioned: 9
pypi: pysam
Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130
pypi: rpy2
Python interface to the R language (embedded R)
Papers that mentioned: 40