Projects: pypi: pyfasta
https://packages.ecosyste.ms/registries/pypi.org/packages/pyfasta
fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
27 versions
Latest release: over 11 years ago
4 dependent packages
1,737 downloads last month
Enhanced Analysis
Educational Contributors:
[email protected]
Repository Activity:
Repository Owner:
Brent Pedersen (user)
Doing genomics at University of Utah Academic
Doing genomics at University of Utah Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Educational commit emails
1 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning pyfasta 9
10.1371/journal.pntd.0007061
Population genetic structure and geographical variation in Neotricula aperta (Gastropoda: Pomatiopsidae), the snail intermediate host of Schistosoma mekongi (Digenea: Schistosomatidae)Cited by: 2
Author(s): Stephen W. Attwood, Liang Liu, Guan-Nan Huo
Software Mentions: 12
Published: over 6 years ago
10.1186/s12859-021-04093-9
Machine learning predicts nucleosome binding modes of transcription factorsCited by: 1
Author(s): K C Kishan, Sridevi K. Subramanya, Rui Li, Feng Cui
Software Mentions: 9
Published: over 4 years ago
10.3389/fmicb.2015.01038
Turbulence-driven shifts in holobionts and planktonic microbial assemblages in St. Peter and St. Paul Archipelago, Mid-Atlantic Ridge, BrazilCited by: 10
Author(s): Ana Paula B. Moreira, Pedro Milet Meirelles, Eidy de Oliveira Santos, Gilberto M. Amado‐Filho, Ronaldo B. Francini‐Filho, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 6
Published: almost 10 years ago
10.1186/s12859-016-1355-4
SPECtre: a spectral coherence-based classifier of actively translated transcripts from ribosome profiling sequence dataCited by: 40
Author(s): Sang-Young Chun, Caitlin M. Rodriguez, Peter K. Todd, Ryan E. Mills
Software Mentions: 4
Published: over 8 years ago
10.1093/gigascience/gix061
A recurrence-based approach for validating structural variation using long-read sequencing technologyCited by: 20
Author(s): Xuefang Zhao, Alexandra M. Weber, Ryan E. Mills
Software Mentions: 4
Published: about 8 years ago
10.1371/journal.pntd.0003935
Comparative Phylogenetic Studies on Schistosoma japonicum and Its Snail Intermediate Host Oncomelania hupensis: Origins, Dispersal and CoevolutionCited by: 24
Author(s): Stephen W. Attwood, Motomu Ibaraki, Yasuhide Saitoh, Naoko Nihei, Daniel Janies
Software Mentions: 3
Published: almost 10 years ago
10.1093/molbev/msab015
The Landscape of Recombination Events That Create Nonribosomal Peptide DiversityCited by: 31
Author(s): Martin Baunach, Somak Chowdhury, Pierre Stallforth, Elke Dittmann
Software Mentions: 2
Published: over 4 years ago
10.1186/s13073-020-00822-6
An integrated in silico immuno-genetic analytical platform provides insights into COVID-19 serological and vaccine targetsCited by: 19
Author(s): Daniel Ward, M.K. Higgins, Jody Phelan, Martin L. Hibberd, Susana Campino, Taane G. Clark
Software Mentions: 2
Published: over 4 years ago
10.1186/s12879-020-05355-2
Genome-wide capture sequencing to detect hepatitis C virus at the end of antiviral therapyCited by: 1
Author(s): Peng Peng, Yingqi Xu, Michael Fried, Adrian M. Di Bisceglie, Xiaofeng Fan
Software Mentions: 1
Published: almost 5 years ago