Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: pyfasta

https://packages.ecosyste.ms/registries/pypi.org/packages/pyfasta

fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
27 versions
Latest release: over 10 years ago
4 dependent packages
1,737 downloads last month

Papers Mentioning pyfasta 9

Population genetic structure and geographical variation in Neotricula aperta (Gastropoda: Pomatiopsidae), the snail intermediate host of Schistosoma mekongi (Digenea: Schistosomatidae)
Cited by: 2
Author(s): Stephen W. Attwood, Liang Liu, Guan-Nan Huo
Software Mentions: 12
Published: over 5 years ago

10.1186/s12859-021-04093-9

Machine learning predicts nucleosome binding modes of transcription factors
Cited by: 1
Author(s): K C Kishan, Sridevi K. Subramanya, Rui Li, Feng Cui
Software Mentions: 9
Published: over 3 years ago

10.3389/fmicb.2015.01038

Turbulence-driven shifts in holobionts and planktonic microbial assemblages in St. Peter and St. Paul Archipelago, Mid-Atlantic Ridge, Brazil
Cited by: 10
Author(s): Ana Paula B. Moreira, Pedro Milet Meirelles, Eidy de Oliveira Santos, Gilberto M. Amado‐Filho, Ronaldo B. Francini‐Filho, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 6
Published: almost 9 years ago

10.1186/s12859-016-1355-4

SPECtre: a spectral coherence-based classifier of actively translated transcripts from ribosome profiling sequence data
Cited by: 40
Author(s): Sang-Young Chun, Caitlin M. Rodriguez, Peter K. Todd, Ryan E. Mills
Software Mentions: 4
Published: almost 8 years ago

10.1093/gigascience/gix061

A recurrence-based approach for validating structural variation using long-read sequencing technology
Cited by: 20
Author(s): Xuefang Zhao, Alexandra M. Weber, Ryan E. Mills
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pntd.0003935

Comparative Phylogenetic Studies on Schistosoma japonicum and Its Snail Intermediate Host Oncomelania hupensis: Origins, Dispersal and Coevolution
Cited by: 24
Author(s): Stephen W. Attwood, Motomu Ibaraki, Yasuhide Saitoh, Naoko Nihei, Daniel Janies
Software Mentions: 3
Published: about 9 years ago

10.1093/molbev/msab015

The Landscape of Recombination Events That Create Nonribosomal Peptide Diversity
Cited by: 31
Author(s): Martin Baunach, Somak Chowdhury, Pierre Stallforth, Elke Dittmann
Software Mentions: 2
Published: over 3 years ago

10.1186/s13073-020-00822-6

An integrated in silico immuno-genetic analytical platform provides insights into COVID-19 serological and vaccine targets
Cited by: 19
Author(s): Daniel Ward, M.K. Higgins, Jody Phelan, Martin L. Hibberd, Susana Campino, Taane G. Clark
Software Mentions: 2
Published: over 3 years ago

10.1186/s12879-020-05355-2

Genome-wide capture sequencing to detect hepatitis C virus at the end of antiviral therapy
Cited by: 1
Author(s): Peng Peng, Yingqi Xu, Michael Fried, Adrian M. Di Bisceglie, Xiaofeng Fan
Software Mentions: 1
Published: about 4 years ago