Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: argparse

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/argparse

Command Line Optional and Positional Argument Parser
20 versions
Latest release: almost 2 years ago
2 dependent packages
3,679 downloads last month

Papers Mentioning argparse 20

10.3389/fninf.2013.00052

A framework for streamlining research workflow in neuroscience and psychology
Cited by: 12
Author(s): Jonas Kubilius
Software Mentions: 25
Published: almost 11 years ago

10.12688/f1000research.12874.2

Measuring evolutionary rates of proteins in a structural context
Cited by: 5
Author(s): Dariya K. Sydykova, Benjamin R. Jack, Scott R. Spielman, Claus O. Wilke
Software Mentions: 12
Published: almost 7 years ago

10.1186/s12859-019-2706-8

svist4get: a simple visualization tool for genomic tracks from sequencing experiments
Cited by: 32
Author(s): Artyom A. Egorov, Ekaterina Sakharova, Aleksandra S. Anisimova, Sergey E. Dmitriev, Vadim N. Gladyshev, Ivan V. Kulakovskiy
Software Mentions: 11
Published: almost 6 years ago

10.3389/fmicb.2020.00037

FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies
Cited by: 164
Author(s): Arkadiy I. Garber, Kenneth H. Nealson, Akimitsu Okamoto, Sean M. McAllister, Clara S. Chan, Roman A. Barco, Nancy Merino
Software Mentions: 10
Published: almost 5 years ago

10.1186/s12911-020-01370-0

An innovative strategy for standardized, structured, and interoperable results in ophthalmic examinations
Cited by: 7
Author(s): Yongseok Mun, Joo-Young Kim, Kyoung Jin Noh, Soochahn Lee, Seok Kim, Sangho Yi, Kyu Hyung Park, Sooyoung Yoo, Dong Jin Chang, Sang Jun Park
Software Mentions: 10
Published: almost 4 years ago

10.3389/fgene.2021.682475

Genomic and Chemical Diversity of Commercially Available High-CBD Industrial Hemp Accessions
Cited by: 10
Author(s): Matthew Johnson, Jason Wallace
Software Mentions: 10
Published: over 3 years ago

10.1093/bioinformatics/btaa073

<i>Coolpup.py:</i> versatile pile-up analysis of Hi-C data
Cited by: 86
Author(s): Ilya M. Flyamer, Robert S. Illingworth, Wendy A. Bickmore
Software Mentions: 10
Published: almost 5 years ago

10.1186/s12859-021-04093-9

Machine learning predicts nucleosome binding modes of transcription factors
Cited by: 1
Author(s): K C Kishan, Sridevi K. Subramanya, Rui Li, Feng Cui
Software Mentions: 9
Published: over 3 years ago

10.12688/wellcomeopenres.10501.2

Making the most of RNA-seq: Pre-processing sequencing data with Opossum for reliable SNP variant detection
Cited by: 35
Author(s): Laura Oikkonen, Stefano Lise
Software Mentions: 8
Published: almost 8 years ago

10.1186/s13072-021-00401-y

Evaluation of whole-genome DNA methylation sequencing library preparation protocols
Cited by: 18
Author(s): Jacob Morrison, Julie Koeman, Benjamin K. Johnson, Kelly K. Foy, Ian Beddows, Wanding Zhou, David Chesla, Larissa L. Rossell, Emily J. Siegwald, Marie Adams, Hui Shen
Software Mentions: 8
Published: over 3 years ago

10.1186/s12864-019-5624-2

ALFA: annotation landscape for aligned reads
Cited by: 9
Author(s): Mathieu Bahin, Benoît Noël, Valentine Murigneux, Charles Bernard, Leïla Bastianelli, Hervé Le Hir, Alice Lebreton, Auguste Genovesio
Software Mentions: 8
Published: over 5 years ago

10.7717/peerj.8111

From command-line bioinformatics to bioGUI
Cited by: 4
Author(s): Markus Joppich, Ralf Zimmer
Software Mentions: 7
Published: about 5 years ago

10.1093/gigascience/giaa068

Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution
Cited by: 8
Author(s): Michael Kluge, Marie-Sophie Friedl, Amrei L Menzel, Caroline C. Friedel
Software Mentions: 7
Published: over 4 years ago

10.7554/eLife.55160

Pyphe, a python toolbox for assessing microbial growth and cell viability in high-throughput colony screens
Cited by: 28
Author(s): Stephan Kamrad, María Rodríguez-López, Cristina Cotobal, Clara Correia‐Melo, Markus Ralser, Jürg Bähler
Software Mentions: 6
Published: over 4 years ago