Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-019-5624-2

https://doi.org/10.1186/s12864-019-5624-2

ALFA: annotation landscape for aligned reads

Cited by: 9
Author(s): Mathieu Bahin, Benoît Noël, Valentine Murigneux, Charles Bernard, Leïla Bastianelli, Hervé Le Hir, Alice Lebreton, Auguste Genovesio
Published: over 5 years ago

Software Mentions 8

cran: argparse
Command Line Optional and Positional Argument Parser
Papers that mentioned: 20
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: argparse
Python command-line parsing library
Papers that mentioned: 20
pypi: conda
OS-agnostic, system-level binary package manager.
Papers that mentioned: 92
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: pybedtools
Wrapper around BEDTools for bioinformatics work
Papers that mentioned: 48
pypi: pysam
Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130