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Papers: 10.1186/s12864-019-5624-2

https://doi.org/10.1186/s12864-019-5624-2

ALFA: annotation landscape for aligned reads

Cited by: 9
Author(s): Mathieu Bahin, Benoît Noël, Valentine Murigneux, Charles Bernard, Leïla Bastianelli, Hervé Le Hir, Alice Lebreton, Auguste Genovesio
Published: over 6 years ago

Software Mentions 8

cran: argparse
Command Line Optional and Positional Argument Parser
Papers that mentioned: 20
Very Likely Science (95)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: argparse
Python command-line parsing library
Papers that mentioned: 20
Very Likely Science (65)
pypi: conda
OS-agnostic, system-level binary package manager.
Papers that mentioned: 92
Very Likely Science (100)
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
Very Likely Science (100)
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
Very Likely Science (100)
pypi: pybedtools
Wrapper around BEDTools for bioinformatics work
Papers that mentioned: 48
Very Likely Science (100)
pypi: pysam
Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130
Very Likely Science (100)