Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/bioinformatics/btaa073

https://doi.org/10.1093/bioinformatics/btaa073

<i>Coolpup.py:</i> versatile pile-up analysis of Hi-C data

Cited by: 86
Author(s): Ilya M. Flyamer, Robert S. Illingworth, Wendy A. Bickmore
Published: almost 5 years ago

Software Mentions 10

cran: argparse

Command Line Optional and Positional Argument Parser
Papers that mentioned: 20

cran: JASPAR

R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283

pypi: argparse

Python command-line parsing library
Papers that mentioned: 20

pypi: cooltools

Analysis tools for genomic interaction data stored in .cool format
Papers that mentioned: 5

pypi: HiCExplorer

Set of programs to process, analyze and visualize Hi-C data
Papers that mentioned: 33

pypi: matplotlib

Python plotting package
Papers that mentioned: 1,045

pypi: numpy

Fundamental package for array computing in Python
Papers that mentioned: 832

pypi: pandas

Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640

pypi: py

library with cross-python path, ini-parsing, io, code, log facilities
Papers that mentioned: 403

pypi: scipy

Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071