Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: cooltools
https://packages.ecosyste.ms/registries/pypi.org/packages/cooltools
Analysis tools for genomic interaction data stored in .cool format
11 versions
Latest release: over 1 year ago
2 dependent packages
429 downloads last month
Papers Mentioning cooltools 5
10.1093/bioinformatics/btaa073
<i>Coolpup.py:</i> versatile pile-up analysis of Hi-C dataCited by: 86
Author(s): Ilya M. Flyamer, Robert S. Illingworth, Wendy A. Bickmore
Software Mentions: 10
Published: over 4 years ago
10.7554/eLife.59889
Cohesin residency determines chromatin loop patternsCited by: 45
Author(s): Lorenzo Costantino, Hsieh Ts, Rebecca Lamothe, Xavier Darzacq, Douglas Koshland
Software Mentions: 7
Published: almost 4 years ago
10.1186/s13059-020-02215-9
FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture dataCited by: 79
Author(s): Kai Kruse, Clemens B. Hug, Juan M. Vaquerizas
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13059-020-02108-x
Spatial patterns of CTCF sites define the anatomy of TADs and their boundariesCited by: 39
Author(s): Luca Nanni, Stefano Ceri, Colin Logie
Software Mentions: 2
Published: about 4 years ago
10.1016/j.celrep.2019.10.031
DNA Methylation Directs Polycomb-Dependent 3D Genome Re-organization in Naive PluripotencyCited by: 71
Author(s): Katy McLaughlin, Ilya M. Flyamer, John P. Thomson, Heidi K. Mjoseng, Ruchi Shukla, Iain Williamson, Graeme R. Grimes, Robert S. Illingworth, Ian R. Adams, Sari Pennings, Richard R. Meehan, Wendy A. Bickmore
Software Mentions: 1
Published: almost 5 years ago