Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: cooltools

https://packages.ecosyste.ms/registries/pypi.org/packages/cooltools

Analysis tools for genomic interaction data stored in .cool format
11 versions
Latest release: almost 2 years ago
2 dependent packages
429 downloads last month

Papers Mentioning cooltools 5

10.1093/bioinformatics/btaa073
<i>Coolpup.py:</i> versatile pile-up analysis of Hi-C data
Cited by: 86
Author(s): Ilya M. Flyamer, Robert S. Illingworth, Wendy A. Bickmore
Software Mentions: 10
Published: almost 5 years ago
10.7554/eLife.59889
Cohesin residency determines chromatin loop patterns
Cited by: 45
Author(s): Lorenzo Costantino, Hsieh Ts, Rebecca Lamothe, Xavier Darzacq, Douglas Koshland
Software Mentions: 7
Published: almost 4 years ago
10.1186/s13059-020-02215-9
FAN-C: a feature-rich framework for the analysis and visualisation of chromosome conformation capture data
Cited by: 79
Author(s): Kai Kruse, Clemens B. Hug, Juan M. Vaquerizas
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13059-020-02108-x
Spatial patterns of CTCF sites define the anatomy of TADs and their boundaries
Cited by: 39
Author(s): Luca Nanni, Stefano Ceri, Colin Logie
Software Mentions: 2
Published: about 4 years ago
10.1016/j.celrep.2019.10.031
DNA Methylation Directs Polycomb-Dependent 3D Genome Re-organization in Naive Pluripotency
Cited by: 71
Author(s): Katy McLaughlin, Ilya M. Flyamer, John P. Thomson, Heidi K. Mjoseng, Ruchi Shukla, Iain Williamson, Graeme R. Grimes, Robert S. Illingworth, Ian R. Adams, Sari Pennings, Richard R. Meehan, Wendy A. Bickmore
Software Mentions: 1
Published: about 5 years ago