Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.59889

https://doi.org/10.7554/eLife.59889

Cohesin residency determines chromatin loop patterns

Cited by: 45
Author(s): Lorenzo Costantino, Hsieh Ts, Rebecca Lamothe, Xavier Darzacq, Douglas Koshland
Published: almost 4 years ago

Software Mentions 7

pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: chromosight
Detect loops (and other patterns) in Hi-C contact maps.
Papers that mentioned: 1
pypi: coolpuppy
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
Papers that mentioned: 1
pypi: cooltools
Analysis tools for genomic interaction data stored in .cool format
Papers that mentioned: 5
pypi: HiCExplorer
Set of programs to process, analyze and visualize Hi-C data
Papers that mentioned: 33
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: Micro
Celery platform to create microservices
Papers that mentioned: 53