Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Micro
https://packages.ecosyste.ms/registries/pypi.org/packages/Micro
Celery platform to create microservices
6 versions
Latest release: over 5 years ago
118 downloads last month
Papers Mentioning Micro 53
10.1186/s13072-021-00390-y
Molecular and computational approaches to map regulatory elements in 3D chromatin structureCited by: 7
Author(s): Beoung Hun Lee, Suhn Kyong Rhie
Software Mentions: 21
Published: over 3 years ago
10.7554/eLife.59889
Cohesin residency determines chromatin loop patternsCited by: 45
Author(s): Lorenzo Costantino, Hsieh Ts, Rebecca Lamothe, Xavier Darzacq, Douglas Koshland
Software Mentions: 7
Published: about 4 years ago
10.1111/eva.12894
Mate choice, reproductive success and inbreeding in white rhinoceros: New insights for conservation managementCited by: 13
Author(s): Petra Kretzschmar, Hailie Auld, Peter T. Boag, Udo Gansloßer, C. Scott, Peter J. Van Coeverden de Groot, Alexandre Courtiol
Software Mentions: 4
Published: almost 5 years ago
10.1002/advs.201903616
BRCA1 Deficiency Impairs Mitophagy and Promotes Inflammasome Activation and Mammary Tumor MetastasisCited by: 37
Author(s): Qiang Chen, Josh Haipeng Lei, Jiaolin Bao, Haitao Wang, Hao Wu, Licen Li, Cheng Peng, Takaaki Masuda, Masahiro Kai, Jun Xu, Xiaoling Xu, Chu Xia Deng
Software Mentions: 3
Published: almost 5 years ago
10.15252/msb.20178007
Antisense transcription‐dependent chromatin signature modulates sense transcript dynamicsCited by: 38
Author(s): Tom Brown, Françoise S. Howe, Struan C. Murray, M Wouters, P. Lorenz, Emily A. Seward, Scott Rata, Andrew Angel, Jane Mellor
Software Mentions: 3
Published: almost 7 years ago
10.1177/1077800420960186
#Plugging Into HopeCited by: 2
Author(s): Esther Fitzpatrick
Software Mentions: 3
Published: about 4 years ago
10.3390/s130201787
Combining Wireless Sensor Networks and Semantic Middleware for an Internet of Things-Based Sportsman/Woman Monitoring ApplicationCited by: 44
Author(s): Jesús Rodríguez‐Molina, José-Fernán Martínez-Ortega, Pedro Castillejo, Lourdes López
Software Mentions: 3
Published: almost 12 years ago
10.1371/journal.pcbi.1004995
Cellular Interrogation: Exploiting Cell-to-Cell Variability to Discriminate Regulatory Mechanisms in Oscillatory SignallingCited by: 7
Author(s): Javier Estrada, Natalie Andrew, Daniel G. Gibson, Frederick Chang, Florian Gnad, Jeremy Gunawardena
Software Mentions: 3
Published: over 8 years ago
10.12688/wellcomeopenres.10507.2
Cdc14 phosphatase directs centrosome re-duplication at the meiosis I to meiosis II transition in budding yeastCited by: 19
Author(s): Colette Fox, Juan Zou, Juri Rappsilber, Adèle L. Marston
Software Mentions: 2
Published: over 7 years ago
10.1002/humu.24218
Identification of missense <i>MAB21L1</i> variants in microphthalmia and aniridiaCited by: 13
Author(s): Sarah E Seese, Linda M. Reis, Brett Deml, Christopher Griffith, Adi Reich, Robyn V Jamieson, Elena V. Semina
Software Mentions: 2
Published: over 3 years ago
10.1002/ece3.6769
Species integrity, introgression, and genetic variation across a coral reef fish hybrid zoneCited by: 5
Author(s): Ashton Gainsford, Geoffrey P. Jones, Jean‐Paul A. Hobbs, Franz M. Heindler, Lynne van Herwerden
Software Mentions: 2
Published: about 4 years ago
10.1002/ece3.3900
Population genetic structure, introgression, and hybridization in the genus <i>Rhizophora</i> along the Brazilian coastCited by: 40
Author(s): Priscila Maria Stolses Bergamo Francisco, Gustavo Maruyama Mori, Fábio de Matos Alves, Evandro Vagner Tambarussi, Anete Pereira de Souza
Software Mentions: 2
Published: over 6 years ago
10.1186/s13059-020-02167-0
Mustache: multi-scale detection of chromatin loops from Hi-C and Micro-C maps using scale-space representationCited by: 75
Author(s): Abbas Roayaei Ardakany, Halil Tuvan Gezer, Stefano Lonardi, Ferhat Ay
Software Mentions: 2
Published: about 4 years ago
10.1016/j.ccell.2019.12.003
Myosin II Reactivation and Cytoskeletal Remodeling as a Hallmark and a Vulnerability in Melanoma Therapy ResistanceCited by: 82
Author(s): José L. Orgaz, Eva Crosas‐Molist, Amine Sadok, Anna Perdrix-Rosell, Óscar Maiques, Irene Rodríguez-Hernández, Jo Monger, Silvia Mele, Mirella Georgouli, Victoria L. Bridgeman, Panagiotis Karagiannis, Rebecca Lee, Pahini Pandya, Lena Boehme, Fredrik Wållberg, Christopher J. Tape, Sophia N. Karagiannis, Ilaria Malanchi, Victoria Sanz-Moreno
Software Mentions: 2
Published: almost 5 years ago
10.1002/ece3.2184
Are sympatrically speciating Midas cichlid fish special? Patterns of morphological and genetic variation in the closely related species<i>Archocentrus centrarchus</i>Cited by: 21
Author(s): Carmelo Fruciano, Paolo Franchini, Francesca Raffini, Shaohua Fan, Axel Meyer
Software Mentions: 2
Published: over 8 years ago
10.4103/0975-7406.76463
Differential scanning calorimetry: An invaluable tool for a detailed thermodynamic characterization of macromolecules and their interactionsCited by: 278
Author(s): Michael Chiu, Elmar J. Prenner
Software Mentions: 2
Published: almost 14 years ago
10.1371/journal.pone.0117534
Randomized Trial of Glucosamine and Chondroitin Supplementation on Inflammation and Oxidative Stress Biomarkers and Plasma Proteomics Profiles in Healthy HumansCited by: 59
Author(s): Sandi L. Navarro, Emily White, Elizabeth D. Kantor, Yuzheng Zhang, Jung-hyun Rho, Xiaoling Song, Ginger L. Milne, Paul D. Lampe, Johanna W. Lampe
Software Mentions: 2
Published: over 9 years ago
10.3389/fsurg.2021.656270
The Micro Hand S vs. da Vinci Surgical Robot-Assisted Surgery on Total Mesorectal Excision: Short-Term Outcomes Using Propensity Score Matching AnalysisCited by: 5
Author(s): Yijia Zeng, Guohui Wang, Zheng Li, Lin Hao, Shaihong Zhu, Bo Yi
Software Mentions: 1
Published: over 3 years ago
10.3390/genes10060415
A (3D-Nuclear) Space Odyssey: Making Sense of Hi-C MapsCited by: 10
Author(s): Irene Mota-Gómez, Darío G. Lupiáñez
Software Mentions: 1
Published: over 5 years ago
10.1186/s13059-015-0738-6
Chromatin in 3D: progress and prospects for plantsCited by: 58
Author(s): Chang Liu, Detlef Weigel
Software Mentions: 1
Published: over 9 years ago
10.1186/s13059-015-0744-8
Filling the gap: Micro-C accesses the nucleosomal fiber at 100–1000 bp resolutionCited by: 4
Author(s): Julien Mozziconacci, Romain Koszul
Software Mentions: 1
Published: over 9 years ago
10.1120/jacmp.v6i1.1995
A gated deep inspiration breath-hold radiation therapy technique using a linear position transducerCited by: 8
Author(s): Svetlana I. Denissova, Mammo Yewondwossen, John W. Andrew, Michael E. Hale, Carl H. Murphy, Scott R. Purcell
Software Mentions: 1
Published: over 19 years ago
10.1111/jcmm.13796
LncRNA HOTAIR/miR‐613/c‐met axis modulated epithelial‐mesenchymal transition of retinoblastoma cellsCited by: 44
Author(s): Ge Yang, Yang Fu, Xiaoyan Lu, Menghua Wang, Heng Dong, Qiuming Li
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.ppat.1002278
The Herpes Simplex Virus-1 Transactivator Infected Cell Protein-4 Drives VEGF-A Dependent NeovascularizationCited by: 45
Author(s): Todd Wuest, Min Zheng, Stacey Efstathiou, William P. Halford, Daniel J.J. Carr
Software Mentions: 1
Published: about 13 years ago
10.1038/srep14641
Band Structure Engineering and Thermoelectric Properties of Charge-Compensated Filled SkutteruditesCited by: 40
Author(s): Shi Xiao-li, Jiong Yang, Lijun Wu, James R. Salvador, Cheng Zhang, William L. Villaire, D. Haddad, Jihui Yang, Yimei Zhu, Qiang Li
Software Mentions: 1
Published: about 9 years ago
10.1038/s41598-021-83400-z
A new congenital cleft palate New Zealand rabbit model for surgical researchCited by: 1
Author(s): Haoyue Liu, Lihui Pu, Chialing Tsauo, Xiaoming Wang, Qian Zheng, Bing Shi, Chenghao Li
Software Mentions: 1
Published: almost 4 years ago
10.1186/1748-7161-8-S1-O26
Micro: a useful and simpler tool to measure the magnitude of scoliosis curves on x-raysCited by: 1
Author(s): Michele Romano, Fabio Zaina, Sabrina Donzelli, Stefano Négrini
Software Mentions: 1
Published: over 11 years ago
10.3390/s18113773
A Flexible 12-Lead/Holter Device with Compression Capabilities for Low-Bandwidth Mobile-ECG Telemedicine ApplicationsCited by: 8
Author(s): Flavio Pineda-Lopez, Andrés Martínez-Fernández, José Luis Rojo-Álvarez, Arcadi Garcı́a Alberola, Manuel Blanco–Velasco
Software Mentions: 1
Published: about 6 years ago
10.3390/s19194141
Visual Measurement of Water Level under Complex Illumination ConditionsCited by: 23
Author(s): Zhen Zhang, Yang Zhou, Haiyun Liu, Lili Zhang, Huibin Wang
Software Mentions: 1
Published: about 5 years ago
10.1186/s13063-016-1773-7
A home-based exercise program for children with congenital heart disease following interventional cardiac catheterization: study protocol for a randomized controlled trialCited by: 8
Author(s): Qing Du, Yasser Salem, Hao Howe Liu, Xuan Zhou, Sun Chen, Nan Chen, Xiaoyan Yang, Jüping Liang, Sun Kim
Software Mentions: 1
Published: almost 8 years ago
10.1007/s00401-017-1756-0
A knock-in/knock-out mouse model of HSPB8-associated distal hereditary motor neuropathy and myopathy reveals toxic gain-of-function of mutant Hspb8Cited by: 54
Author(s): Delphine Bouhy, Manisha Juneja, István Katona, A. Holmgren, Bob Asselbergh, Vicky De Winter, Tino Hochepied, Steven Goossens, Jody J. Haigh, Claude Libert, Chantal Ceuterick‐de Groote, Joy Irobi, Joachim Weis, Vincent Timmerman
Software Mentions: 1
Published: over 7 years ago
10.3390/ijerph15081784
6 Hz Active Anticonvulsant Fluorinated N-Benzamide Enaminones and Their Inhibitory Neuronal ActivityCited by: 9
Author(s): Isis J. Amaye, Thomas Heinbockel, Julia Woods, Zejun Wang, Miguel Martin‐Caraballo, Patrice L. Jackson-Ayotunde
Software Mentions: 1
Published: over 6 years ago
10.3390/ijerph17093318
A Conceptual Framework for Modelling Safe Walking and Cycling Routes to High SchoolsCited by: 22
Author(s): Mohammad Lutfur Rahman, Antoni Moore, Melody Smith, John Lieswyn, Sandra Mandic
Software Mentions: 1
Published: over 4 years ago
10.7554/eLife.07118
Coordination of peptidoglycan synthesis and outer membrane constriction during Escherichia coli cell divisionCited by: 145
Author(s): Andrew N. Gray, Alexander J F Egan, Inge L. van't Veer, Jolanda Verheul, Alexandre Colavin, Alexandra Koumoutsi, Jacob Biboy, Maarten Altelaar, Mirjam J Damen, Kerwyn Casey Huang, Jean-Pierre Simorre, Eefjan Breukink, Tanneke den Blaauwen, Athanasios Typas, Carol A. Gross, Waldemar Vollmer
Software Mentions: 1
Published: over 9 years ago
10.3390/ijms221910216
MiR-125a-3p and MiR-320b Differentially Expressed in Patients with Chronic Myeloid Leukemia Treated with Allogeneic Hematopoietic Stem Cell Transplantation and Imatinib MesylateCited by: 0
Author(s): Juliana Ravelli Baldassarre Martins, Leonardo Nazário de Moraes, Sarah Santiloni Cury, Juliana Capannacci, Robson Francisco Carvalho, Célia Regina Nogueira, Newton Key Hokama, Paula de Oliveira Montandon Hokama
Software Mentions: 1
Published: about 3 years ago
10.3892/ijo.2011.1294
Novel oncogenic function of mesoderm development candidate 1 and its regulation by MiR-574-3p in bladder cancer cell linesCited by: 53
Author(s): Shuichi Tatarano, Takeshi Chiyomaru, Kazumori Kawakami, Hideki Enokida, Hirofumi Yoshino, Hideo Hidaka, Nijiro Nohata, Takahiro Yamasaki, Takenari Gotanda, Tokushi Tachiwada, Naohiko Seki, Masayuki Nakagawa
Software Mentions: 1
Published: almost 13 years ago
10.1002/advs.201800749
Zinc‐Modified Sulfonated Polyetheretherketone Surface with Immunomodulatory Function for Guiding Cell Fate and Bone RegenerationCited by: 158
Author(s): Wei Liu, Jinhua Li, Mengqi Cheng, Qiaojie Wang, Kelvin Wai Kwok Yeung, Paul K. Chu, Xianlong Zhang
Software Mentions: 1
Published: over 6 years ago
10.1186/1756-0500-5-10
Guidelines for information about therapy experiments: a proposal on best practice for recording experimental data on cancer therapyCited by: 1
Author(s): Alejandra N. González-Beltrán, May Yong, Gairin Dancey, R. H. J. Begent
Software Mentions: 1
Published: almost 13 years ago
10.1002/cam4.1727
Positive predictive values of fecal immunochemical tests used in the STOP CRC pragmatic trialCited by: 15
Author(s): Carrie M. Nielson, Amanda F. Petrik, Lorie Jacob, William M. Vollmer, Erin Keast, Jennifer L. Schneider, Jennifer S. Rivelli, Tanya Kapka, Richard T. Meenan, Rajasekhara R. Mummadi, Beverly B. Green, Gloria D. Coronado
Software Mentions: 1
Published: over 6 years ago
10.3390/microorganisms8050741
Escherichia coli Isolated from Cases of Colibacillosis in Russian Poultry Farms (Perm Krai): Sensitivity to Antibiotics and BacteriocinsCited by: 11
Author(s): М В Кузнецова, Julia S. Gizatullina, L. Yu. Nesterova, Marjanca Starčič Erjavec
Software Mentions: 1
Published: over 4 years ago
10.1002/mgg3.299
Genetics and genomic medicine in CubaCited by: 5
Author(s): Hilda Roblejo Balbuena, Beatríz Marcheco Teruel
Software Mentions: 1
Published: over 7 years ago
10.1186/s40248-017-0089-0
Longitudinal assessment of bleomycin-induced lung fibrosis by Micro-CT correlates with histological evaluation in miceCited by: 63
Author(s): Francesca Ruscitti, Francesca Ravanetti, Jeroen Essers, Yanto Ridwan, Sasha Belenkov, Wim Vos, Flávio Ferreira, Alex KleinJan, Paula van Heijningen, Cedric Van Holsbeke, Antonio Cacchioli, Gino Villetti, Franco Fabio Stellari
Software Mentions: 1
Published: over 7 years ago
10.1111/pim.12609
Effects of host‐derived chemokines on the motility and viability of<i>Trypanosoma brucei</i>Cited by: 6
Author(s): Omar A. Alfituri, Olumide Ajibola, James M. Brewer, Paul Garside, Robert A. Benson, Tamlyn Peel, Liam J. Morrison, Neil A. Mabbott
Software Mentions: 1
Published: almost 6 years ago
10.14814/phy2.14065
Visualization of the intrarenal distribution of capillary blood flowCited by: 7
Author(s): Letao Fan, Shaoxun Wang, Xiaochen He, Ezekiel Gonzalez‐Fernandez, C. Lechène, Fan Fan, Richard J. Roman
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0007891
Long-Branch Attraction Bias and Inconsistency in Bayesian PhylogeneticsCited by: 76
Author(s): Bryan Kolaczkowski, Joseph W. Thornton
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0190586
Anticipating different grips reduces bimanual end-state comfort: A tradeoff between goal-related and means-related planning processesCited by: 3
Author(s): Christian Seegelke, Matthias Weigelt
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0224372
Unraveling middle childhood attachment-related behavior sequences using a micro-coding approachCited by: 3
Author(s): Nadja Bodner, Guy Bosmans, Jasmien Sannen, Martine W. F. T. Verhees, Eva Ceulemans
Software Mentions: 1
Published: about 5 years ago
10.7759/cureus.950
Three-Dimensional Printing of a Hemorrhagic Cervical Cancer Model for Postgraduate Gynecological TrainingCited by: 15
Author(s): Michael Bartellas, Stephen F. Ryan, Gregory Doucet, Deanna Murphy, Jacqueline A. Turner
Software Mentions: 1
Published: almost 8 years ago
10.1002/ece3.3518
Seasonal genetic variation associated with population dynamics of a poecilogonous polychaete wormCited by: 7
Author(s): Anne Thonig, Gary Thomas Banta, Benni Winding Hansen, K. Emily Knott
Software Mentions: 1
Published: about 7 years ago
10.3389/fcell.2020.626221
Identification of Genome Sequences of Polyphosphate-Accumulating Organisms by Machine LearningCited by: 0
Author(s): Bohan Liu, Jun Nan, Xuehui Zu, Xinhui Zhang, Qiliang Xiao
Software Mentions: 1
Published: almost 4 years ago
10.3389/fncom.2014.00111
The ISI distribution of the stochastic Hodgkin-Huxley neuronCited by: 14
Author(s): Peter F. Rowat, Priscilla E. Greenwood
Software Mentions: 1
Published: about 10 years ago
10.3389/fonc.2020.01544
Comparison of microRNA Expression Profile in Chronic Myeloid Leukemia Patients Newly Diagnosed and Treated by Allogeneic Hematopoietic Stem Cell TransplantationCited by: 7
Author(s): Juliana Ravelli Baldassarre Martins, Leonardo Nazário de Moraes, Sarah Santiloni Cury, Juliane Dadalto, Juliana Capannacci, Robson Francisco Carvalho, Célia Regina Nogueira, Newton Key Hokama, Paula de Oliveira Montandon Hokama
Software Mentions: 1
Published: about 4 years ago