Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7717/peerj.5882

https://doi.org/10.7717/peerj.5882

imGLAD: accurate detection and quantification of target organisms in metagenomes

Cited by: 20
Author(s): Juan Castro, Luis M. Rodriguez-R, William T. Harvey, Michael R. Weigand, Janet K. Hatt, Michelle Qiu Carter, Konstantinos T. Konstantinidis
Published: about 6 years ago

Software Mentions 5

pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
pypi: screed
a Python library for loading FASTA and FASTQ sequences
Papers that mentioned: 1
pypi: statsmodels
Statistical computations and models for Python
Papers that mentioned: 277