Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.68312

https://doi.org/10.7554/eLife.68312

A plant-like mechanism coupling m6A reading to polyadenylation safeguards transcriptome integrity and developmental gene partitioning in Toxoplasma

Cited by: 12
Author(s): Dayana C Farhat, Matthew W. Bowler, Guillaume Communie, Dominique Pontier, Lucid Belmudes, Caroline Mas, Charlotte Corrao, Yohann Couté, Alexandre Bougdour, Thierry Lagrange, Mohamed‐Ali Hakimi, Christopher Swale
Published: about 3 years ago

Software Mentions 8

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
pypi: coot
Papers that mentioned: 136
pypi: Epinano
call variants, compute variants frequencies from bam file and use the frequencies to predict RNA base modifications
Papers that mentioned: 2
pypi: linux

Papers that mentioned: 450
pypi: pysam
Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
pypi: snakemake
Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45
pypi: statsmodels
Statistical computations and models for Python
Papers that mentioned: 277