Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.7554/eLife.68312
https://doi.org/10.7554/eLife.68312
A plant-like mechanism coupling m6A reading to polyadenylation safeguards transcriptome integrity and developmental gene partitioning in Toxoplasma
Cited by: 12
Author(s): Dayana C Farhat, Matthew W. Bowler, Guillaume Communie, Dominique Pontier, Lucid Belmudes, Caroline Mas, Charlotte Corrao, Yohann Couté, Alexandre Bougdour, Thierry Lagrange, Mohamed‐Ali Hakimi, Christopher Swale
Published: about 3 years ago
Software Mentions 8
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
pypi: coot
Papers that mentioned: 136pypi: Epinano
call variants, compute variants frequencies from bam file and use the frequencies to predict RNA base modificationsPapers that mentioned: 2
pypi: snakemake
Workflow management system to create reproducible and scalable data analysesPapers that mentioned: 45