Ecosyste.ms: Papers

10.7554/eLife.68312

A plant-like mechanism coupling m6A reading to polyadenylation safeguards transcriptome integrity and developmental gene partitioning in Toxoplasma
Cited by: 12
Author(s): Dayana C Farhat, Matthew W. Bowler, Guillaume Communie, Dominique Pontier, Lucid Belmudes, Caroline Mas, Charlotte Corrao, Yohann Couté, Alexandre Bougdour, Thierry Lagrange, Mohamed‐Ali Hakimi, Christopher Swale
Software Mentions: 8
Published: over 3 years ago

10.1111/febs.13690

Structural and kinetic studies on RosA, the enzyme catalysing the methylation of 8-demethyl-8-amino-<scp>d</scp> -riboflavin to the antibiotic roseoflavin
Cited by: 13
Author(s): Chanakan Tongsook, M. Uhl, Frank Jankowitsch, Matthias Mack, Karl Gruber, Peter Macheroux
Software Mentions: 6
Published: almost 9 years ago

10.1111/1751-7915.12168

Functional and structural diversity in <scp>GH</scp> 62 α‐ <scp>L</scp> ‐arabinofuranosidases from the thermophilic fungus <scp> <i>S</i> </scp> <i>cytalidium thermophilum</i>
Cited by: 28
Author(s): Amrit Pal Kaur, B. Nocek, Xiaohui Xu, Michael J. Lowden, Juan Francisco Leyva, P.J. Stogios, Hong Cui, Rosa Di Leo, Justin Powlowski, Adrian Tsang, Alexei Savchenko
Software Mentions: 6
Published: about 10 years ago

10.1242/bio.040683

Fgf3 is crucial for the generation of monoaminergic cerebrospinal fluid contacting cells in zebrafish
Cited by: 4
Author(s): Isabel Reuter, Jana Jäckels, Susanne Kneitz, Jochen Kuper, Klaus–Peter Lesch, Christina Lillesaar
Software Mentions: 5
Published: almost 6 years ago

10.1111/febs.14660

The structure of<scp>INI</scp>1/<scp>hSNF</scp>5<scp>RPT</scp>1 and its interactions with the c‐<scp>MYC</scp>:<scp>MAX</scp>heterodimer provide insights into the interplay between<scp>MYC</scp>and the<scp>SWI</scp>/<scp>SNF</scp>chromatin remodeling complex
Cited by: 21
Author(s): Susan Sammak, Mark D. Allen, Najoua Hamdani, Mark Bycroft, Giovanna Zinzalla
Software Mentions: 5
Published: about 6 years ago

10.1002/2211-5463.12259

Structural flexibility of human α-dystroglycan
Cited by: 12
Author(s): Sonia Covaceuszach, Manuela Bozzi, Maria Giulia Bigotti, Francesca Sciandra, Petr V. Konarev, Andrea Brancaccio, Alberto Cassetta
Software Mentions: 5
Published: over 7 years ago

10.1002/2211-5463.12491

Crystal structure of the retroviral protease‐like domain of a protozoal <scp>DNA</scp> damage‐inducible 1 protein
Cited by: 9
Author(s): Sushant Kumar, K. Suguna
Software Mentions: 5
Published: over 6 years ago

10.1002/2211-5463.12700

C7orf59/LAMTOR4 phosphorylation and structural flexibility modulate Ragulator assembly
Cited by: 5
Author(s): Nadia Rasheed, Tatiani B. Lima, Gustavo Fernando Mercaldi, Andrey Fabricio Ziem Nascimento, Ana L S Silva, Germanna Lima Righetto, Liron Bar-Peled, Kuang Shen, David M. Sabatini, Fábio C. Gozzo, Ricardo Aparício, Juliana Helena Costa Smetana
Software Mentions: 4
Published: over 5 years ago

10.1111/febs.12975

Collapse of the native structure caused by a single amino acid exchange in human<scp>NAD</scp>(P)H:quinone oxidoreductase¹
Cited by: 53
Author(s): Wolf‐Dieter Lienhart, Venugopal Gudipati, M. Uhl, Alexandra Binter, Sergio Pulido, Robert Saf, Klaus Zangger, Karl Gruber, Peter Macheroux
Software Mentions: 4
Published: over 10 years ago

10.1111/febs.12929

Crystal structure of the antimicrobial peptidase lysostaphin from <i>Staphylococcus simulans</i>
Cited by: 66
Author(s): I. Sabala, Elżbieta Jagielska, Philip Bardelang, H. Czapinska, S.O. Dahms, Jason A. Sharpe, Richard James, Manuel E. Than, Neil R. Thomas, Matthias Bochtler
Software Mentions: 4
Published: over 10 years ago

10.1111/febs.14688

The structure of PghL hydrolase bound to its substrate poly‐γ‐glutamate
Cited by: 2
Author(s): Sneha Ramaswamy, Masooma Rasheed, Carlo F. Morelli, Cinzia Calvio, Brian J. Sutton, Annalisa Pastore
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.18227

Mechanism for nuclease regulation in RecBCD
Cited by: 34
Author(s): M. K. Wilkinson, Yuriy Chaban, Dale B. Wigley
Software Mentions: 4
Published: over 8 years ago

10.1016/j.cell.2019.12.014

Structural Basis of Teneurin-Latrophilin Interaction in Repulsive Guidance of Migrating Neurons
Cited by: 84
Author(s): Daniel del Toro, Maria Carrasquero-Ordaz, Amy Chu, Tobias Ruff, Meriam Shahin, V.A. Jackson, Matthieu Chavent, Miguel Berbeira-Santana, Goenuel Seyit-Bremer, Sara Brignani, Rainer Kaufmann, E.D. Lowe, Rüdiger Klein, E. Seiradake
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.58362

Structural basis of mitochondrial translation
Cited by: 61
Author(s): Shintaro Aibara, Vivek P. Singh, A. Modelska, Alexey Amunts
Software Mentions: 3
Published: over 4 years ago

10.15252/embr.201948191

Partially inserted nascent chain unzips the lateral gate of the Sec translocon
Cited by: 36
Author(s): Lukas Kater, Benedikt Frieg, Otto Berninghausen, Holger Gohlke, Roland Beckmann, Alexej Kedrov
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0119289

Structure Determination of Feline Calicivirus Virus-Like Particles in the Context of a Pseudo-Octahedral Arrangement
Cited by: 11
Author(s): W.P. Burmeister, Marlyse Buisson, Leandro F. Estrozi, Guy Schoehn, Olivier Billet, Zahia Hannas, Cécile Sigoillot, Hervé Poulet
Software Mentions: 3
Published: almost 10 years ago

10.1038/srep26847

Protein rethreading: A novel approach to protein design
Cited by: 4
Author(s): Sayeh Agah, Sandra Poulos, A Kosinsky Yu, Iga Kucharska, Salem Faham
Software Mentions: 3
Published: over 8 years ago

10.3389/fbioe.2020.00707

An (R)-Selective Transaminase From Thermomyces stellatus: Stabilizing the Tetrameric Form
Cited by: 18
Author(s): Christian M. Heckmann, L.J. Gourlay, Beatriz Domı́nguez, Francesca Paradisi
Software Mentions: 3
Published: over 4 years ago

10.1002/2211-5463.12387

Ligand complex structures of <scp>l</scp> ‐amino acid oxidase/monooxygenase from <i>Pseudomonas</i> sp. <scp>AIU</scp> 813 and its conformational change
Cited by: 11
Author(s): Dohyun Im, Daisuke Matsui, T. Arakawa, Kazuo Isobe, Yasuhisa Asano, Shinya Fushinobu
Software Mentions: 3
Published: almost 7 years ago

10.7554/eLife.59753

Structures of diverse poxin cGAMP nucleases reveal a widespread role for cGAS-STING evasion in host–pathogen conflict
Cited by: 29
Author(s): J.B. Eaglesham, Kacie McCarty, Philip J. Kranzusch
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pbio.3001344

Structure of the human C9orf72-SMCR8 complex reveals a multivalent protein interaction architecture
Cited by: 6
Author(s): Julia Nörpel, Simone Cavadini, Andreas Schenk, Alexandra Graff-Meyer, Daniel Heß, Jan Seebacher, Jeffrey A. Chao, Varun Bhaskar
Software Mentions: 3
Published: over 3 years ago

10.1002/2211-5463.12807

Structural and biophysical characterization of the type VII collagen vWFA2 subdomain leads to identification of two binding sites
Cited by: 1
Author(s): Jan Gebauer, Florian Flachsenberg, Cordula Windler, Barbara Richer, Ulrich Baumann, Karsten Seeger
Software Mentions: 3
Published: almost 5 years ago

10.1016/j.bpj.2018.03.040

Evaluating Anti-CD32b F(ab) Conformation Using Molecular Dynamics and Small-Angle X-Ray Scattering
Cited by: 3
Author(s): Emma J. Sutton, Richard T. Bradshaw, Christian M. Orr, Björn Frendéus, Gunilla Larsson, Ingrid Teige, Mark S. Cragg, Ivo Tews, Jonathan W. Essex
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.ppat.1005265

The Structure of the RNA-Dependent RNA Polymerase of a Permutotetravirus Suggests a Link between Primer-Dependent and Primer-Independent Polymerases
Cited by: 25
Author(s): D.S. Ferrero, M. Buxaderas, José F. Rodrı́guez, N. Verdaguer
Software Mentions: 3
Published: about 9 years ago

10.1111/j.1742-4658.2011.08320.x

Crystal structure of Onconase at 1.1 Å resolution – insights into substrate binding and collective motion
Cited by: 13
Author(s): Daniel E. Holloway, Umesh Singh, Kuslima Shogen, K. Ravi Acharya
Software Mentions: 3
Published: about 13 years ago

10.1038/s41598-020-58138-9

Structural characterization and in-silico analysis of Momordica charantia 7S globulin for stability and ACE inhibition
Cited by: 26
Author(s): Pooja Kesari, Shivendra Pratap, Poonam Dhankhar, Vikram Dalal, Manisha Mishra, Pradyumna Kumar Singh, Harsh Chauhan, Pravindra Kumar
Software Mentions: 3
Published: almost 5 years ago

10.1111/febs.13711

Structural studies of neuropilin-2 reveal a zinc ion binding site remote from the vascular endothelial growth factor binding pocket
Cited by: 13
Author(s): Yi-Chun Isabella Tsai, Constantina Fotinou, Rohini R. Rana, Tamas Yelland, Paul Frankel, Ian Zachary, Snežana Djordjević
Software Mentions: 3
Published: over 8 years ago

10.1007/s00792-013-0542-8

The role of disulfide bond in hyperthermophilic endocellulase
Cited by: 13
Author(s): Han-Woo Kim, Kazuhiko Ishikawa
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pntd.0006180

Inhibitors of Trypanosoma cruzi Sir2 related protein 1 as potential drugs against Chagas disease
Cited by: 9
Author(s): Luís Gaspar, Ross P.. Coron, Paul Kong Thoo Lin, David Costa, Begoña Pérez-Cabezas, Joana Tavares, Meritxell Roura-Ferrer, Isbaal Ramos, C. Ronin, Louise L. Major, Fabrice Ciesielski, Iain K. Pemberton, Jane MacDougall, Paola Ciapetti, Terry Smith, Anabela Cordeiro-da-Silva
Software Mentions: 3
Published: almost 7 years ago

10.1111/febs.14976

<i>Burkholderia pseudomallei</i> <scp>d</scp> ‐alanine‐ <scp>d</scp> ‐alanine ligase; detailed characterisation and assessment of a potential antibiotic drug target
Cited by: 3
Author(s): L. Diaz-Saez, Leah S. Torrie, Stuart P. McElroy, David W. Gray, William N. Hunter
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.50486

Molecular basis of force-from-lipids gating in the mechanosensitive channel MscS
Cited by: 75
Author(s): Bharat Reddy, Navid Bavi, Allen Lu, Yeonwoo Park, Eduardo Perozo
Software Mentions: 2
Published: almost 5 years ago

10.7554/eLife.01496

Crystal structures of virus-like photosystem I complexes from the mesophilic cyanobacterium Synechocystis PCC 6803
Cited by: 66
Author(s): Yuval Mazor, Daniel Nataf, Hila Toporik, Nathan Nelson
Software Mentions: 2
Published: almost 11 years ago

10.7554/eLife.41845

Cryo-EM structure of the mechanically activated ion channel OSCA1.2
Cited by: 106
Author(s): Sebastian Jojoa-Cruz, Kei Saotome, Swetha E. Murthy, Che Chun Tsui, Mark S. P. Sansom, Ardem Patapoutian, Andrew B. Ward
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms20061401

Time-Resolved Macromolecular Crystallography at Pulsed X-ray Sources
Cited by: 38
Author(s): Marius Schmidt
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22094769

Crystal Structure of Escherichia coli Agmatinase: Catalytic Mechanism and Residues Relevant for Substrate Specificity
Cited by: 4
Author(s): Pablo Maturana, Marı́a S. Orellana, Sixto M. Herrera, Ignacio Martı́nez, Maximiliano Figueroa, José Martínez‐Oyanedel, Víctor Castro‐Fernández, Elena Uribe
Software Mentions: 2
Published: over 3 years ago

10.1111/jth.12849

Coagulation factor XII protease domain crystal structure
Cited by: 48
Author(s): Monika Pathak, P.G. Wilmann, James Awford, C. Li, Badraldin Kareem Hamad, Peter M. Fischer, Ingrid Dreveny, Lodewijk V. Dekker, Jonas Emsley
Software Mentions: 2
Published: over 9 years ago

10.1111/febs.12778

The substrate specificity, enantioselectivity and structure of the (<i>R</i>)-selective amine : pyruvate transaminase from<i>Nectria haematococca</i>
Cited by: 60
Author(s): C. Sayer, R.J. Martinez-Torres, Nina Richter, Michail N. Isupov, Helen C. Hailes, Jennifer A. Littlechild, John M. Ward
Software Mentions: 2
Published: over 10 years ago

10.1111/febs.12071

Crystal structures of murine angiogenin‐2 and ‐3 – probing ‘structure – function’ relationships amongst angiogenin homologues
Cited by: 8
Author(s): Shalini Iyer, Daniel E. Holloway, K. Ravi Acharya
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0034918

Insights into the Mechanism of Bovine CD38/NAD+Glycohydrolase from the X-Ray Structures of Its Michaelis Complex and Covalently-Trapped Intermediates
Cited by: 20
Author(s): Pascal F. Egea, Hélène Muller-Steffner, Isabelle Kuhn, Céline Cakir-Kiefer, Norman J. Oppenheimer, Robert M. Stroud, Esther Kellenberger, Francis Schuber
Software Mentions: 2
Published: over 12 years ago

10.1111/j.1742-4658.2011.08276.x

Structural characterization of angiotensin I‐converting enzyme in complex with a selenium analogue of captopril
Cited by: 30
Author(s): M. Akif, Geoffrey Masuyer, S.L.U. Schwager, Bhaskar J. Bhuyan, Govindasamy Mugesh, R. Elwyn Isaac, Edward D. Sturrock, K. Ravi Acharya
Software Mentions: 2
Published: over 13 years ago

10.1016/j.cell.2013.05.014

OTULIN Antagonizes LUBAC Signaling by Specifically Hydrolyzing Met1-Linked Polyubiquitin
Cited by: 381
Author(s): Kirstin Keusekotten, P.R. Elliott, Laura Glockner, Berthe Katrine Fiil, Rune Busk Damgaard, Yogesh Kulathu, Tobias Wauer, Manuela K. Hospenthal, Mads Gyrd‐Hansen, Daniel Krappmann, Kay Hofmann, David Komander
Software Mentions: 2
Published: over 11 years ago

10.1002/1873-3468.13667

Crystal structure of the catalytic D2 domain of the AAA+ ATPase p97 reveals a putative helical split‐washer‐type mechanism for substrate unfolding
Cited by: 5
Author(s): Lasse Stach, Rhodri M. L. Morgan, Linda Makhlouf, A. Douangamath, F. von Delft, Xiaodong Zhang, Paul S. Freemont
Software Mentions: 2
Published: about 5 years ago

10.1002/2211-5463.12168

Structural evidence for<i>Arabidopsis</i>glutathione transferase<i>At</i>GSTF2 functioning as a transporter of small organic ligands
Cited by: 20
Author(s): Laziana Ahmad, Elizabeth L. Rylott, Neil C. Bruce, Robert Edwards, Gideon Grogan
Software Mentions: 2
Published: about 8 years ago

10.1002/2211-5463.12132

The structure of Toho1 β‐lactamase in complex with penicillin reveals the role of Tyr105 in substrate recognition
Cited by: 11
Author(s): Patricia S. Langan, Venu Gopal Vandavasi, Kevin L. Weiss, J.B. Cooper, Stephan L. Ginell, Leighton Coates
Software Mentions: 2
Published: about 8 years ago

10.1002/2211-5463.12029

The 2.2‐Angstrom resolution crystal structure of the carboxy‐terminal region of ataxin‐3
Cited by: 12
Author(s): Vladimir Zhemkov, Anna A. Kulminskaya, Ilya Bezprozvanny, Meewhi Kim
Software Mentions: 2
Published: almost 9 years ago

10.1002/2211-5463.12720

Characterization of an intertidal zone metagenome oligoribonuclease and the role of the intermolecular disulfide bond for homodimer formation and nuclease activity
Cited by: 1
Author(s): Yvonne Piotrowski, Kristel Berg, David P. Klebl, Ingar Leiros, Atle Noralf Larsen
Software Mentions: 2
Published: over 5 years ago

10.1002/2211-5463.12264

Anthranilate phosphoribosyltransferase from the hyperthermophilic archaeon<i>Thermococcus kodakarensis</i>shows maximum activity with zinc and forms a unique dimeric structure
Cited by: 9
Author(s): Sumera Perveen, Naeem Rashid, Xiaofeng Tang, Tadayuki Imanaka, Anastassios C. Papageorgiou
Software Mentions: 2
Published: over 7 years ago

10.1002/2211-5463.13222

Structural and functional characterization of a plant alpha‐actinin
Cited by: 1
Author(s): Karina Persson, Lars Backman
Software Mentions: 2
Published: over 3 years ago

10.1002/2211-5463.12212

Crystal structure of the essential biotin-dependent carboxylase AccA3 from<i>Mycobacterium tuberculosis</i>
Cited by: 2
Author(s): M.D. Bennett, Martin Högbom
Software Mentions: 2
Published: over 7 years ago

10.1016/j.devcel.2019.07.017

Temporal Ordering in Endocytic Clathrin-Coated Vesicle Formation via AP2 Phosphorylation
Cited by: 37
Author(s): Antoni G. Wrobel, Zuzana Kadlecova, Jan Kamenický, Ji‐Chun Yang, Torsten Herrmann, Bernard T. Kelly, Airlie J. McCoy, Philip R. Evans, Stephen R. Martin, Stefan Müller, Susanne Salomon, Filip Šroubek, David Neuhaus, Stefan Höning, David J. Owen
Software Mentions: 2
Published: over 5 years ago

10.1002/2211-5463.13159

Crystal structure of a novel homodimeric <scp>l</scp> ‐ribulose 3‐epimerase from <i>Methylomonus</i> sp.
Cited by: 5
Author(s): Hiromi Yoshida, Akihide Yoshihara, Shiro Kato, Susumu Mochizuki, Kazuya Akimitsu, Ken Izumori, Shigehiro Kamitori
Software Mentions: 2
Published: over 3 years ago

10.3390/biom10040660

Structure of the ALS Mutation Target Annexin A11 Reveals a Stabilising N-Terminal Segment
Cited by: 8
Author(s): Peder August Gudmundsen Lillebostad, Arne Raasakka, Silje Hjellbrekke, Sudarshan Patil, Trude Røstbø, Hanne Hollås, Siri Aastedatter Sakya, Peter D. Szigetvari, Anni Vedeler, Petri Kursula
Software Mentions: 2
Published: over 4 years ago

10.1002/2211-5463.12772

Crystal structure of the translation recovery factor Trf from <i>Sulfolobus solfataricus</i>
Cited by: 1
Author(s): Marco Kaiser, Jan Philip Wurm, Birgit Märtens, Udo Bläsi, Denys Pogoryelov, Jens Wöhnert
Software Mentions: 2
Published: about 5 years ago

10.1002/2211-5463.12931

High‐resolution crystal structures of the botulinum neurotoxin binding domains from subtypes A5 and A6
Cited by: 4
Author(s): Jonathan Davies, Amy Britton, Sai Man Liu, K. Ravi Acharya
Software Mentions: 2
Published: over 4 years ago

10.3390/molecules24173044

Sub-Atomic Resolution Crystal Structures Reveal Conserved Geometric Outliers at Functional Sites
Cited by: 5
Author(s): Saara Laulumaa, Petri Kursula
Software Mentions: 2
Published: over 5 years ago

10.1002/2211-5463.12595

Molecular structure of a 5,10‐methylenetetrahydrofolate dehydrogenase from the silkworm <i>Bombyx mori</i>
Cited by: 4
Author(s): Mohammad Rashedul Haque, Akifumi Higashiura, Atsushi Nakagawa, Aiko Hirowatari, Shigeki Furuya, Kohji Yamamoto
Software Mentions: 2
Published: almost 6 years ago

10.1002/2211-5463.12873

Substrate recognition by a bifunctional GH30‐7 xylanase B from<i>Talaromyces cellulolyticus</i>
Cited by: 12
Author(s): Yusuke Nakamichi, Masahiro Watanabe, Akinori Matsushika, Hiroyuki Inoue
Software Mentions: 2
Published: over 4 years ago

10.1002/2211-5463.12986

A high‐resolution (1.2 Å) crystal structure of the anti‐CRISPR protein AcrIF9
Cited by: 6
Author(s): Gi Eob Kim, So Yeon Lee, Hyun Ho Park
Software Mentions: 2
Published: about 4 years ago

10.1111/febs.13828

Structure and biochemical properties of recombinant human dimethylglycine dehydrogenase and comparison to the disease‐related H109R variant
Cited by: 13
Author(s): Peter Augustín, Altijana Hromic, Tea Pavkov‐Keller, Karl Gruber, Peter Macheroux
Software Mentions: 2
Published: about 8 years ago

10.3389/fimmu.2021.662909

Sequence-Signature Optimization Enables Improved Identification of Human HV6-1-Derived Class Antibodies That Neutralize Diverse Influenza A Viruses
Cited by: 0
Author(s): Gwo-Yu Chuang, Chen‐Hsiang Shen, Catherine Cheung, Jason Gorman, Adrian Creanga, Michael Joyce, Kwanyee Leung, Reda Rawi, Lingshu Wang, Eun Sung Yang, Yongping Yang, Baoshan Zhang, Yi Zhang, Masaru Kanekiyo, Tongqing Zhou, Brandon J. DeKosky, Barney S. Graham, John R. Mascola, Peter D. Kwong
Software Mentions: 2
Published: over 3 years ago

10.1111/febs.13930

Hydrogen peroxide‐mediated conversion of coproheme to heme <i>b</i> by HemQ—lessons from the first crystal structure and kinetic studies
Cited by: 36
Author(s): Stefan Hofbauer, Georg Mlynek, Lisa Milazzo, Dominic Pühringer, Daniel Maresch, Irene Schaffner, Paul G. Furtmüller, Giulietta Smulevich, Kristina Djinović-Carugo, Christian Obinger
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2016.01850

Structure and Function of the TIR Domain from the Grape NLR Protein RPV1
Cited by: 34
Author(s): Simon J. Williams, Ling Yin, Gabriel Foley, Lachlan W. Casey, Megan A. Outram, Daniel Ericsson, Jiang Lu, Mikael Bodén, Ian B. Dry, Boštjan Kobe
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2019.00880

Plant-Made Nervous Necrosis Virus-Like Particles Protect Fish Against Disease
Cited by: 26
Author(s): Johanna Marsian, Daniel L. Hurdiss, Neil A. Ranson, Anneli Ritala, Richard Paley, Irene Cano, George P. Lomonossoff
Software Mentions: 2
Published: over 5 years ago

10.1007/s00251-019-01112-1

HLA-F*01:01 presents peptides with N-terminal flexibility and a preferred length of 16 residues
Cited by: 12
Author(s): Gia-Gia T Hò, Funmilola J. Heinen, Trevor Huyton, Rainer Blasczyk, Christina Bade‐Doeding
Software Mentions: 2
Published: over 5 years ago

10.1111/j.1742-4658.2011.08022.x

Factor‐inhibiting hypoxia‐inducible factor (FIH) catalyses the post‐translational hydroxylation of histidinyl residues within ankyrin repeat domains
Cited by: 69
Author(s): Ming Yang, Rasheduzzaman Chowdhury, Wei Ge, Refaat B. Hamed, Michael A. McDonough, Timothy D. W. Claridge, Benedikt M. Kessler, Matthew E. Cockman, Peter J. Ratcliffe, Christopher J. Schofield
Software Mentions: 2
Published: almost 14 years ago

10.1016/j.jbc.2021.100679

A versatile cis-prenyltransferase from Methanosarcina mazei catalyzes both C- and O-prenylations
Cited by: 2
Author(s): Miyako Okada, Hajime Unno, Koh-ichi Emi, Mayuko Matsumoto, Hisashi Hemmi
Software Mentions: 2
Published: almost 4 years ago

10.1128/AAC.00681-18

Structure-Based Drug Design and Characterization of Sulfonyl-Piperazine Benzothiazinone Inhibitors of DprE1 from Mycobacterium tuberculosis
Cited by: 41
Author(s): Jéremie Piton, Anthony Vocat, Andréanne Lupien, Caroline S. Foo, Olga Riabova, Vadim Makarov, Stewart T. Cole
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1003078

The GM2 Glycan Serves as a Functional Coreceptor for Serotype 1 Reovirus
Cited by: 95
Author(s): Kerstin Reiß, Jennifer Stencel, Yan Liu, Bärbel S. Blaum, Dirk M. Reiter, Ten Feizi, Terence S. Dermody, Thilo Stehle
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.ppat.1005351

Mycobacterial Metabolic Syndrome: LprG and Rv1410 Regulate Triacylglyceride Levels, Growth Rate and Virulence in Mycobacterium tuberculosis
Cited by: 76
Author(s): Amanda J. Martinot, Mary F. Farrow, Lu Bai, Emilie Layre, Tan-Yun Cheng, Jennifer Tsai, Jahangir Iqbal, John W. Annand, Zuri A. Sullivan, M. Mahmood Hussain, James C. Sacchettini, D. Branch Moody, Jessica C. Seeliger, Eric J. Rubín
Software Mentions: 2
Published: almost 9 years ago

10.1111/febs.12308

The architecture of<i><scp>T</scp>rypanosoma brucei</i>tubulin‐binding cofactor <scp>B</scp>and implications for function
Cited by: 6
Author(s): Jennifer R. Fleming, Rachel Morgan, Paul K. Fyfe, Sharon M. Kelly, William N. Hunter
Software Mentions: 2
Published: over 11 years ago

10.1007/s13238-017-0465-8

A binding-block ion selective mechanism revealed by a Na/K selective channel
Cited by: 13
Author(s): Jie Yu, Bing Zhang, Yixiao Zhang, Chaoqun Xu, Wei Zhuo, Jingpeng Ge, Jun Li, Ning Gao, Yang Li, Maojun Yang
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0172629

Structural and biochemical studies on Vibrio cholerae Hsp31 reveals a novel dimeric form and Glutathione-independent Glyoxalase activity
Cited by: 2
Author(s): Samir Das, Sanghati Roy Chowdhury, Sanjay Dey, U. Sen
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-22300-1

Structural and functional studies on Pseudomonas aeruginosa DspI: implications for its role in DSF biosynthesis
Cited by: 20
Author(s): Li Liu, Tao Li, Xiao Cheng, Peng Cheng, Changcheng Li, Libang He, Si-Min Ju, Ningyu Wang, Tinghong Ye, Mao Lian, Qing-Jie Xiao, Yingjie Song, Yuanfeng Zhu, Luoting Yu, Zhen-Ling Wang, Rui Bao
Software Mentions: 2
Published: almost 7 years ago

10.1111/j.1365-2958.2006.05332.x

Structure and reactivity of <i>Trypanosoma brucei</i> pteridine reductase: inhibition by the archetypal antifolate methotrexate
Cited by: 57
Author(s): Alice Dawson, Federica Gibellini, Natasha Sienkiewicz, L.B. Tulloch, Paul K. Fyfe, Karen McLuskey, Alan H. Fairlamb, William N. Hunter
Software Mentions: 2
Published: over 18 years ago

10.1038/s41598-018-36195-5

Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase
Cited by: 4
Author(s): B. Van Laer, U. Kapp, Montserrat Soler-López, Kaja Ewa Moczulska, Svante Pääbo, Gordon A. Leonard, Christoph Mueller-Dieckmann
Software Mentions: 2
Published: about 6 years ago

10.1016/j.str.2020.11.017

Clamping, bending, and twisting inter-domain motions in the misfold-recognizing portion of UDP-glucose: Glycoprotein glucosyltransferase
Cited by: 13
Author(s): Carlos P. Modenutti, Juan I. Blanco Capurro, Roberta Ibba, Dominic S. Alonzi, Mauro N. Song, Snežana Vasiljević, Abhinav Kumar, Anu V. Chandran, Gábor Tax, Lucia Marti, Johan C. Hill, Andrea Lia, Mario Hensen, Thomas Waksman, Jonathan Rushton, Simone Rubichi, Angelo Santino, Marcelo A. Martí, Nicole Zitzmann, Pietro Roversi
Software Mentions: 2
Published: over 3 years ago

10.1016/j.str.2020.12.008

Using cryo-EM to understand antimycobacterial resistance in the catalase-peroxidase (KatG) from Mycobacterium tuberculosis
Cited by: 11
Author(s): Asma Munir, Michael T. Wilson, Steven W. Hardwick, Dimitri Y. Chirgadze, J.A.R. Worrall, Tom L. Blundell, Amanda K. Chaplin
Software Mentions: 2
Published: over 3 years ago

10.1128/mBio.00395-17

Structural Basis for Linezolid Binding Site Rearrangement in the <i>Staphylococcus aureus</i> Ribosome
Cited by: 33
Author(s): Matthew J. Belousoff, Zohar Eyal, Mazdak Radjainia, Tofayel Ahmed, Rebecca S. Bamert, Donna Matzov, Anat Bashan, Ella Zimmerman, Satabdi Mishra, David R. Cameron, Hans Elmlund, Anton Y. Peleg, Shashi Bhushan, Trevor Lithgow, Ada Yonath
Software Mentions: 2
Published: over 7 years ago

10.1111/febs.15167

Molecular basis for <scp>GTP</scp> recognition by light‐activated guanylate cyclase Rh<scp>GC</scp>
Cited by: 8
Author(s): A. Butryn, Hadeeqa Raza, Heather Rada, Isabel Moraes, Raymond J. Owens, Allen M. Orville
Software Mentions: 2
Published: about 5 years ago

10.1111/j.1742-4658.2008.06418.x

Characterization of Aquifex aeolicus 4-diphosphocytidyl-2C-methyl-d-erythritol kinase - ligand recognition in a template for antimicrobial drug discovery
Cited by: 30
Author(s): Tanja Sgraja, M.S. Alphey, Stephanos Ghilagaber, Rodolfo Marquez, Murray N. Robertson, Jennifer Luise Hemmings, Susan Lauw, Felix Rohdich, Adelbert Bacher, Wolfgang Eisenreich, Victoria Illarionova, William N. Hunter
Software Mentions: 2
Published: over 16 years ago

10.1111/jth.13773

Assessment of the protein interaction between coagulation factor XII and corn trypsin inhibitor by molecular docking and biochemical validation
Cited by: 10
Author(s): Badraldin Kareem Hamad, Monika Pathak, Rosa Manna, Peter M. Fischer, Jonas Emsley, Lodewijk V. Dekker
Software Mentions: 1
Published: over 7 years ago

10.3390/antibiotics9070373

Squalamine and Aminosterol Mimics Inhibit the Peptidoglycan Glycosyltransferase Activity of PBP1b
Cited by: 8
Author(s): Adrien Boes, Jean‐Michel Brunel, Adeline Derouaux, Frédéric Kerff, Ahmed Bouhss, Thierry Touzé, Eefjan Breukink, Mohammed Terrak
Software Mentions: 1
Published: over 4 years ago

10.1186/s12900-015-0039-z

Structure of the stationary phase survival protein YuiC from B.subtilis
Cited by: 6
Author(s): Doris H.X. Quay, A.R. Cole, Adam Cryar, Konstantinos Thalassinos, Mark A. Williams, Sanjib Bhakta, Nicholas H. Keep
Software Mentions: 1
Published: over 9 years ago

10.1186/s12900-018-0087-2

Structure and dynamics of a human myelin protein P2 portal region mutant indicate opening of the β barrel in fatty acid binding proteins
Cited by: 19
Author(s): Saara Laulumaa, Tuomo Nieminen, Arne Raasakka, Oda C. Krokengen, Anushik Safaryan, Erik I. Hallin, Guillaume Brysbaert, Marc F. Lensink, Salla Ruskamo, Ilpo Vattulainen, Petri Kursula
Software Mentions: 1
Published: over 6 years ago

10.1042/BSR20171617

Structure and function of urea amidolyase
Cited by: 11
Author(s): Jing Zhao, Li Zhu, Fan Chen, Yi Wu, Song Xiang
Software Mentions: 1
Published: almost 7 years ago

10.3390/microorganisms9020393

From Data Mining of Chitinophaga sp. Genome to Enzyme Discovery of a Hyperthermophilic Metallocarboxypeptidase
Cited by: 5
Author(s): Gabriela Cabral Fernandes, Elwi Guillermo Machado Sierra, P. Brear, Mariana Rangel Pereira, Eliana Gertrudes Macedo Lemos
Software Mentions: 1
Published: almost 4 years ago

10.3390/microorganisms8010004

Structural and Functional Characterization of Stx2k, a New Subtype of Shiga Toxin 2
Cited by: 21
Author(s): Anna Hughes, Yuzhu Zhang, Xiangning Bai, Yanwen Xiong, Yan Wang, Xi Yang, Qingping Xu, Xiaohua He
Software Mentions: 1
Published: about 5 years ago

10.1111/j.1365-2958.2008.06293.x

Crystal structure of Spa40, the specificity switch for the <i>Shigella flexneri</i> type III secretion system
Cited by: 59
Author(s): Janet E. Deane, Stephen C. Graham, Edward P. Mitchell, David Flot, Steven Johnson, Susan M. Lea
Software Mentions: 1
Published: over 16 years ago

10.1111/mmi.12249

Cyanuric acid hydrolase: evolutionary innovation by structural concatenation
Cited by: 32
Author(s): Thomas S. Peat, Sahil Balotra, M. A. Wilding, Nigel G. French, Lyndall J. Briggs, Santosh Panjikar, Nathan Cowieson, Janet Newman, Colin Scott
Software Mentions: 1
Published: over 11 years ago

10.3390/v12080878

Structural Insights into Lactococcal Siphophage p2 Baseplate Activation Mechanism
Cited by: 6
Author(s): S. Spinelli, Denise M. Tremblay, Sylvain Moineau, Christian Cambillau, Adeline Goulet
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pbio.1000212

Kissing G Domains of MnmE Monitored by X-Ray Crystallography and Pulse Electron Paramagnetic Resonance Spectroscopy
Cited by: 43
Author(s): Simon De Meyer, Sabine Böhme, André Krüger, Heinz−Jürgen Steinhoff, Johann P. Klare, Alfred Wittinghofer
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0067547

The Mode of Inhibitor Binding to Peptidyl-tRNA Hydrolase: Binding Studies and Structure Determination of Unbound and Bound Peptidyl-tRNA Hydrolase from Acinetobacter baumannii
Cited by: 21
Author(s): Saroj Kaushik, Nagendra Singh, S. Yamini, Avinash Singh, Mau Sinha, Ashish Arora, Punit Kaur, Sujata Sharma
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0075207

Discovery of a New Genetic Variant of Methionine Aminopeptidase from Streptococci with Possible Post-Translational Modifications: Biochemical and Structural Characterization
Cited by: 16
Author(s): T. Arya, Chandan Kishor, Venkateshwarlu Saddanapu, Ravikumar Reddi, A. Addlagatta
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0012245

Structural Insights into the Quinolone Resistance Mechanism of Mycobacterium tuberculosis DNA Gyrase
Cited by: 119
Author(s): Jéremie Piton, S. Pétrella, Marc Delarue, Gwenaëlle André-Leroux, Vincent Jarlier, Alexandra Aubry, Claudine Mayer
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0143947

Structure of the Varicella Zoster Virus Thymidylate Synthase Establishes Functional and Structural Similarities as the Human Enzyme and Potentiates Itself as a Target of Brivudine
Cited by: 14
Author(s): Kelly Hew, Sue-Li Dahlroth, Saranya Veerappan, Lucy Xin Pan, Tobias Cornvik, P. Nordlund
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0185226

Structural insights into substrate selectivity of ribosomal RNA methyltransferase RlmCD
Cited by: 5
Author(s): Yiyang Jiang, Fudong Li, Jihui Wu, Yunyu Shi, Qingguo Gong
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0046795

Potassium Acts as a GTPase-Activating Element on Each Nucleotide-Binding Domain of the Essential Bacillus subtilis EngA
Cited by: 21
Author(s): Anne-Emmanuelle Foucher, Jean‐Baptiste Reiser, Christine Ebel, D. Housset, Jean‐Michel Jault
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0128954

Dynamics of the Peripheral Membrane Protein P2 from Human Myelin Measured by Neutron Scattering—A Comparison between Wild-Type Protein and a Hinge Mutant
Cited by: 16
Author(s): Saara Laulumaa, Tuomo Nieminen, M. Lehtimaki, Sandeep Aggarwal, Mikael Simons, Michael Marek Koza, Ilpo Vattulainen, Petri Kursula, Francesca Natali
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2015.10.001

Structural dataset for the fast-exchanging KRAS G13D
Cited by: 5
Author(s): Jia Liu, John C. Hunter, Anuj Manandhar, Deepak Gurbani, Kenneth D. Westover
Software Mentions: 1
Published: about 9 years ago

10.1038/emboj.2013.125

Structure of the human Parkin ligase domain in an autoinhibited state
Cited by: 270
Author(s): Tobias Wauer, David Komander
Software Mentions: 1
Published: over 11 years ago