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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1371/journal.pgen.1009065

https://doi.org/10.1371/journal.pgen.1009065

Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association study

Cited by: 49
Author(s): Marco Galardini, Olivier Clermont, Agnès Baron, Bede P. Busby, Sara Dion, Sören Schubert, Pedro Beltrão, Erick Denamur
Published: over 4 years ago

Software Mentions 20

pypi: biopython
Freely available tools for computational molecular biology.
Papers that mentioned: 114
Very Likely Science (100)
pypi: blast
a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
Papers that mentioned: 1,819
Very Likely Science (65)
pypi: eggnog-mapper
Fast functional annotation of novel sequences using eggNOG orthology assignments.
Papers that mentioned: 41
Very Likely Science (80)
pypi: ete3
A Python Environment for (phylogenetic) Tree Exploration
Papers that mentioned: 28
Very Likely Science (100)
pypi: goatools
Python scripts to find enrichment of GO terms
Papers that mentioned: 24
Very Likely Science (100)
pypi: gubbins
Serial number generator/validator
Papers that mentioned: 4
Very Likely Science (100)
pypi: jupyterlab
JupyterLab computational environment
Papers that mentioned: 4
Very Likely Science (100)
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
Very Likely Science (100)
pypi: ncbi-genome-download
Download genome files from the NCBI FTP server.
Papers that mentioned: 7
Very Likely Science (100)
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
Very Likely Science (100)
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
Very Likely Science (90)
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
Very Likely Science (100)
pypi: pybedtools
Wrapper around BEDTools for bioinformatics work
Papers that mentioned: 48
Very Likely Science (100)
pypi: pyseer
Papers that mentioned: 17
Unlikely Science (0)
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431
Very Likely Science (100)
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
Very Likely Science (100)
pypi: seaborn
Statistical data visualization
Papers that mentioned: 283
Very Likely Science (100)
pypi: snakemake
Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45
Very Likely Science (100)
pypi: staramr
Scans genome contigs against ResFinder, PlasmidFinder, and PointFinder databases
Papers that mentioned: 6
Very Likely Science (100)
pypi: statsmodels
Statistical computations and models for Python
Papers that mentioned: 277
Very Likely Science (90)