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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: pypi: staramr

https://packages.ecosyste.ms/registries/pypi.org/packages/staramr

Scans genome contigs against ResFinder, PlasmidFinder, and PointFinder databases
18 versions
Latest release: almost 2 years ago
190 downloads last month

Enhanced Analysis
Repository Activity:
Repository Owner: National Microbiology Laboratory (organization) Academic
README Analysis: DOI Found CITATION.cff
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +16 Science terms in README
    8 scientific terms found in README
  • +20 DOI references
    2 DOI references found in README
  • +15 CITATION.cff file
    Contains citation file for academic attribution
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -10 No science terms in description
    No scientific terms found in description
Very Likely Science (100)

Papers Mentioning staramr 6

10.1371/journal.pgen.1009065
Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association study
Cited by: 49
Author(s): Marco Galardini, Olivier Clermont, Agnès Baron, Bede P. Busby, Sara Dion, Sören Schubert, Pedro Beltrão, Erick Denamur
Software Mentions: 20
Published: over 4 years ago
10.3389/fmicb.2021.662144
Whole Resistome Analysis in Campylobacter jejuni and C. coli Genomes Available in Public Repositories
Cited by: 16
Author(s): José F. Cobo‐Díaz, Paloma González Del Río, Avelino Álvarez‐Ordóñez
Software Mentions: 5
Published: about 4 years ago
10.1371/journal.pone.0235641
Genomic analyses of multidrug-resistant Salmonella Indiana, Typhimurium, and Enteritidis isolates using MinION and MiSeq sequencing technologies
Cited by: 14
Author(s): Chen Zhao, Dai Kuang, Xuebin Xu, Narjol González-Escalona, David L. Erickson, Eric W. Brown, Jianghong Meng
Software Mentions: 3
Published: about 5 years ago
10.1186/s12864-020-07041-8
Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing
Cited by: 36
Author(s): Chen Zhao, David L. Erickson, Jianghong Meng
Software Mentions: 2
Published: almost 5 years ago
10.3390/antibiotics10030237
Antibiotic Resistance in Shiga Toxigenic Escherichia coli Isolates from Surface Waters and Sediments in a Mixed Use Urban Agricultural Landscape
Cited by: 8
Author(s): Yvonne Ma, Jessica Chen, Karen Fong, Stephanie Nadya, Kevin Allen, Chad R. Laing, Kim Ziebell, Ed Topp, Laura M. Carroll, Pascal Delaquis, Siyun Wang
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms21239161
Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing
Cited by: 24
Author(s): Chen Zhao, David L. Erickson, Jianghong Meng
Software Mentions: 1
Published: over 4 years ago