Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: staramr

https://packages.ecosyste.ms/registries/pypi.org/packages/staramr

Scans genome contigs against ResFinder, PlasmidFinder, and PointFinder databases
18 versions
Latest release: about 1 year ago
190 downloads last month

Papers Mentioning staramr 6

Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association study
Cited by: 49
Author(s): Marco Galardini, Olivier Clermont, Agnès Baron, Bede P. Busby, Sara Dion, Sören Schubert, Pedro Beltrão, Erick Denamur
Software Mentions: 20
Published: about 4 years ago

10.3389/fmicb.2021.662144

Whole Resistome Analysis in Campylobacter jejuni and C. coli Genomes Available in Public Repositories
Cited by: 16
Author(s): José F. Cobo‐Díaz, Paloma González Del Río, Avelino Álvarez‐Ordóñez
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0235641

Genomic analyses of multidrug-resistant Salmonella Indiana, Typhimurium, and Enteritidis isolates using MinION and MiSeq sequencing technologies
Cited by: 14
Author(s): Chen Zhao, Dai Kuang, Xuebin Xu, Narjol González-Escalona, David L. Erickson, Eric W. Brown, Jianghong Meng
Software Mentions: 3
Published: over 4 years ago

10.1186/s12864-020-07041-8

Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing
Cited by: 36
Author(s): Chen Zhao, David L. Erickson, Jianghong Meng
Software Mentions: 2
Published: about 4 years ago

10.3390/antibiotics10030237

Antibiotic Resistance in Shiga Toxigenic Escherichia coli Isolates from Surface Waters and Sediments in a Mixed Use Urban Agricultural Landscape
Cited by: 8
Author(s): Yvonne Ma, Jessica Chen, Karen Fong, Stephanie Nadya, Kevin Allen, Chad R. Laing, Kim Ziebell, Ed Topp, Laura M. Carroll, Pascal Delaquis, Siyun Wang
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21239161

Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing
Cited by: 24
Author(s): Chen Zhao, David L. Erickson, Jianghong Meng
Software Mentions: 1
Published: almost 4 years ago