Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: goatools
https://packages.ecosyste.ms/registries/pypi.org/packages/goatools
Python scripts to find enrichment of GO terms
46 versions
Latest release: about 1 year ago
17 dependent packages
4,858 downloads last month
Papers Mentioning goatools 24
10.1371/journal.pgen.1009065
Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association studyCited by: 49
Author(s): Marco Galardini, Olivier Clermont, Agnès Baron, Bede P. Busby, Sara Dion, Sören Schubert, Pedro Beltrão, Erick Denamur
Software Mentions: 20
Published: about 4 years ago
10.12688/f1000research.17548.2
Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and PythonCited by: 8
Author(s): Klara Kaleb, Alex Warwick Vesztrocy, Adrian M. Altenhoff, Christophe Dessimoz
Software Mentions: 13
Published: over 5 years ago
10.12688/wellcomeopenres.16430.2
Polysomal mRNA Association and Gene Expression in Trypanosoma bruceiCited by: 0
Author(s): Michele Tinti, Anna Kelner-Mirôn, Lizzie J. Marriott, Michael A. J. Ferguson
Software Mentions: 11
Published: about 3 years ago
10.15252/msb.20209819
Phosphoproteomics identifies microglial Siglec‐F inflammatory response during neurodegenerationCited by: 17
Author(s): Nader Morshed, William T. Ralvenius, Alexi Nott, L. Ashley Watson, Felicia H. Rodriguez, Leyla Anne Akay, Brian A. Joughin, Ping‐Chieh Pao, Jay Penney, Lauren M. LaRocque, Diego Mastroeni, Li Huei Tsai, Forest M. White
Software Mentions: 9
Published: almost 4 years ago
10.1111/mec.14054
The fire ant social chromosome supergene variant Sb shows low diversity but high divergence from SBCited by: 60
Author(s): Rodrigo Pracana, Anurag Priyam, Levantis Ilya, Richard A. Nichols, Yannick Wurm
Software Mentions: 8
Published: over 7 years ago
10.1371/journal.pone.0246052
Transcriptomic profiling of susceptible and resistant flax seedlings after Fusarium oxysporum lini infectionCited by: 10
Author(s): Aleksandra Boba, Kamil Kostyń, Bartosz Kozak, Iwan Zalewski, Jan Szopa, Anna Kulma
Software Mentions: 8
Published: almost 4 years ago
10.3390/ijms21010269
Genome-Wide Identification and Characterization of the Mitochondrial Transcription Termination Factors (mTERFs) in Capsicum annuum L.Cited by: 20
Author(s): Bi‐Yu Tang, Lingling Xie, Tao Yi, Junheng Lv, Huiping Yang, Xiang Cheng, Feng Liu, Xuexiao Zou
Software Mentions: 6
Published: almost 5 years ago
10.1371/journal.pone.0147221
Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and ProteogenomicsCited by: 36
Author(s): Robert A. Syme, Kar‐Chun Tan, James K. Hane, Kejal N Dodhia, Thomas Stoll, Marcus L. Hastie, Eiko Furuki, Simon R. Ellwood, Angela H. Williams, Yew‐Foon Tan, Alison C. Testa, Jeffrey J. Gorman, Richard P. Oliver
Software Mentions: 4
Published: almost 9 years ago
10.1186/s12859-017-1698-5
NaviSE: superenhancer navigator integrating epigenomics signal algebraCited by: 5
Author(s): Alex M. Ascensión, Mikel Arrospide-Elgarresta, Ander Izeta, Marcos J. Araúzo-Bravo
Software Mentions: 4
Published: over 7 years ago
10.1186/s12864-016-3034-2
Transcriptome sequencing reveals genome-wide variation in molecular evolutionary rate among fernsCited by: 11
Author(s): Amanda L. Grusz, Carl J. Rothfels, Eric Schuettpelz
Software Mentions: 3
Published: about 8 years ago
10.1186/s12864-021-07837-2
Comparative analyses of the Hymenoscyphus fraxineus and Hymenoscyphus albidus genomes reveals potentially adaptive differences in secondary metabolite and transposable element repertoiresCited by: 5
Author(s): Malin Elfstrand, Jun Chen, Michelle Cleary, Sandra Halecker, Katarina Ihrmark, Magnus Karlsson, Kateryna Davydenko, Jan Stenlid, Marc Stadler, Mikael Brandström Durling
Software Mentions: 3
Published: over 3 years ago
10.1128/mSystems.00142-16
Integrated Regulatory and Metabolic Networks of the Marine Diatom <i>Phaeodactylum tricornutum</i> Predict the Response to Rising CO <sub>2</sub> LevelsCited by: 37
Author(s): Jennifer Levering, Christopher L. Dupont, Andrew E. Allen, Bernhard Ø. Palsson, Karsten Zengler
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-019-42178-x
Exploratory Gene Ontology Analysis with Interactive VisualizationCited by: 9
Author(s): Junjie Zhu, Qian Zhao, Eugene Katsevich, Chiara Sabatti
Software Mentions: 2
Published: over 5 years ago
10.3389/fgene.2020.565085
Identification and Characterization of circRNA in Longissimus Dorsi of Different Breeds of CattleCited by: 18
Author(s): Ruili Liu, Xianxun Liu, Xuejin Bai, Xiao Chen, Yanjun Dong
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12862-015-0434-x
Positive selection in development and growth rate regulation genes involved in species divergence of the genus RadixCited by: 12
Author(s): Barbara Feldmeyer, Bastian Greshake, Elisabeth Funke, Ingo Ebersberger, Markus Pfenninger
Software Mentions: 2
Published: about 9 years ago
10.1186/s12859-021-03989-w
Ranking cancer drivers via betweenness-based outlier detection and random walksCited by: 5
Author(s): Cesim Erten, Aissa Houdjedj, Hilal Kazan
Software Mentions: 2
Published: over 3 years ago
10.1093/database/bay114
ZFLNC: a comprehensive and well-annotated database for zebrafish lncRNACited by: 24
Author(s): Xiang Hu, Wen Chen, Jing Li, Shulan Huang, Xuling Xu, Xuan Zhang, Sheng Xiang, Changning Liu
Software Mentions: 1
Published: almost 7 years ago
10.3390/microorganisms8121848
Transcriptional Landscape of Waddlia chondrophila Aberrant Bodies Induced by Iron StarvationCited by: 3
Author(s): Silvia Ardissone, Aurélie Scherler, Trestan Pillonel, Virginie Martin, Carole Kebbi-Beghdadi, Gilbert Greub
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-018-4458-7
Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafishCited by: 27
Author(s): Wen Chen, Xuan Zhang, Jing Li, Shulan Huang, Sheng Xiang, Xiang Hu, Changning Liu
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2164-13-246
Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplicationsCited by: 87
Author(s): Jianguo Lü, Eric Peatman, Haibao Tang, Joshua P. Lewis, Zhanjiang Liu
Software Mentions: 1
Published: over 12 years ago
10.1186/1471-2229-13-19
Transcriptome analysis of embryo maturation in maizeCited by: 24
Author(s): Keat Thomas Teoh, Deborah Vicuna Requesens, Shivakumar P. Devaiah, Daniel Johnson, Xiuzhen Huang, John A. Howard, Elizabeth E. Hood
Software Mentions: 1
Published: almost 12 years ago
10.3389/fmicb.2018.00406
An Ontology Systems Approach on Human Brain Expression and MetaproteomicsCited by: 4
Author(s): Adolfo Flores-Saiffe Farías, Adriana P. Mendizabal-Ruiz, J. Alejandro Morales
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-017-12326-2
Dynamic transcriptome and phytohormone profiling along the time of light exposure in the mesocotyl of rice seedlingCited by: 28
Author(s): Fang Fěng, Hanwei Mei, Ping Fan, Yanan Li, Xiaoyan Xu, Haibin Wei, Mengyao Yan, Lijun Luo
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-020-77094-y
Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonicaCited by: 3
Author(s): Miki Okuno, Shuntaro Miyamoto, Takehiko Itoh, Masahide Seki, Yutaka Suzuki, Shusei Mizushima, Asato Kuroiwa
Software Mentions: 1
Published: almost 4 years ago