Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: ncbi-genome-download
https://packages.ecosyste.ms/registries/pypi.org/packages/ncbi-genome-download
Download genome files from the NCBI FTP server.
25 versions
Latest release: over 1 year ago
1 dependent package
696 downloads last month
Papers Mentioning ncbi-genome-download 7
10.1371/journal.pgen.1009065
Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association studyCited by: 49
Author(s): Marco Galardini, Olivier Clermont, Agnès Baron, Bede P. Busby, Sara Dion, Sören Schubert, Pedro Beltrão, Erick Denamur
Software Mentions: 20
Published: about 4 years ago
10.7717/peerj.7548
Genome-resolved insights into a novel<i>Spiroplasma</i>symbiont of the Wheat Stem Sawfly (<i>Cephus cinctus)</i>Cited by: 11
Author(s): Carl J. Yeoman, Laura M. Brutscher, Özcan C. Esen, Furkan Ibaoglu, Curtis Fowler, A. Murat Eren, Kevin W. Wanner, David K. Weaver
Software Mentions: 4
Published: over 5 years ago
10.1128/mSystems.00190-20
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial GenomesCited by: 64
Author(s): Robert A. Petit, Timothy D. Read
Software Mentions: 3
Published: over 4 years ago
10.1099/mgen.0.000293
Loss of microbial diversity and pathogen domination of the gut microbiota in critically ill patientsCited by: 56
Author(s): Anuradha Ray, Fenella D. Halstead, Amy Bamford, Anna Casey, Nicholas M. Thomson, Willem van Schaik, Catherine Snelson, Robert Goulden, Ebenezer Foster-Nyarko, George M. Savva, Tony Whitehouse, Mark J. Pallen, Beryl Oppenheim
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pntd.0006805
Metagenomic profiling of ticks: Identification of novel rickettsial genomes and detection of tick-borne canine parvovirusCited by: 24
Author(s): Anuradha Ray, Suheir Ereqat, Amer Al-Jawabreh, Ziad Abdeen, Omar Abu Shamma, Holly Hall, Mark J. Pallen, Abedelmajeed Nasereddin
Software Mentions: 2
Published: almost 6 years ago
10.12688/f1000research.21782.4
Benchmarking of long-read assemblers for prokaryote whole genome sequencingCited by: 89
Author(s): Ryan R. Wick, Kathryn E. Holt
Software Mentions: 2
Published: almost 4 years ago
10.3389/fmicb.2021.726847
The Hidden Genomic Diversity, Specialized Metabolite Capacity, and Revised Taxonomy of Burkholderia Sensu LatoCited by: 11
Author(s): Alex J. Mullins, Eshwar Mahenthiralingam
Software Mentions: 2
Published: over 3 years ago