Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-019-0702-x

https://doi.org/10.1186/s40168-019-0702-x

Understanding microbial community dynamics to improve optimal microbiome selection

Cited by: 193
Author(s): Robyn J. Wright, Matthew I. Gibson, Joseph Alexander Christie-Oleza
Published: over 5 years ago

Software Mentions 18

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
cran: phangorn
Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192
cran: plotly
Create Interactive Web Graphics via 'plotly.js'
Papers that mentioned: 163
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: plotly
An open-source, interactive data visualization library for Python
Papers that mentioned: 163
pypi: scikit-bio
Data structures, algorithms and educational resources for bioinformatics.
Papers that mentioned: 41
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
pypi: sklearn
deprecated sklearn package, use scikit-learn instead
Papers that mentioned: 559