Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-021-81773-9

https://doi.org/10.1038/s41598-021-81773-9

Verifying explainability of a deep learning tissue classifier trained on RNA-seq data

Cited by: 26
Author(s): Melvyn Yap, Rebecca L. Johnston, Helena Foley, Samual MacDonald, Olga Kondrashova, Khoa Tran, Kátia Nones, Lambros T. Koufariotis, Cameron Bean, John V. Pearson, Maciej Trzaskowski, Nicola Waddell
Published: almost 4 years ago

Software Mentions 9

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
cran: eulerr
Area-Proportional Euler and Venn Diagrams with Ellipses
Papers that mentioned: 47
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: sklearn
deprecated sklearn package, use scikit-learn instead
Papers that mentioned: 559
pypi: smote-variants
Variants of the synthetic minority oversampling technique (SMOTE) for imbalanced learning
Papers that mentioned: 1
pypi: umap-learn
Uniform Manifold Approximation and Projection
Papers that mentioned: 13