Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: umap-learn
https://packages.ecosyste.ms/registries/pypi.org/packages/umap-learn
Uniform Manifold Approximation and Projection
38 versions
Latest release: about 1 year ago
244 dependent packages
1,010,449 downloads last month
Papers Mentioning umap-learn 13
10.7717/peerj.10849
modelBuildR: an R package for model building and feature selection with erroneous classificationsCited by: 3
Author(s): Maximilian Knoll, Jennifer Furkel, Jürgen Debus, Amir Abdollahi
Software Mentions: 12
Published: over 3 years ago
10.3389/fimmu.2021.602539
Single-Cell Transcriptomic Analyses Define Distinct Peripheral B Cell Subsets and Discrete Development PathwaysCited by: 60
Author(s): Alexander Stewart, Joseph C.F. Ng, Gillian A. Wallis, Vasiliki Tsioligka, Franca Fraternali, Deborah K. Dunn‐Walters
Software Mentions: 10
Published: over 3 years ago
10.1016/j.cell.2021.07.017
Whole-body integration of gene expression and single-cell morphologyCited by: 59
Author(s): Hernando Vergara, Constantin Pape, Kimberly Meechan, Valentyna Zinchenko, Christel Genoud, Adrian Wanner, Kevin Nzumbi Mutemi, Benjamin Titze, Rachel Templin, Paola Bertucci, Oleg Simakov, Wiebke Dürichen, Pedro Machado, Emily L. Savage, Lothar Schermelleh, Yannick Schwab, Rainer W. Friedrich, Anna Kreshuk, Christian Tischer, Detlev Arendt
Software Mentions: 10
Published: about 3 years ago
10.1038/s41598-021-81773-9
Verifying explainability of a deep learning tissue classifier trained on RNA-seq dataCited by: 26
Author(s): Melvyn Yap, Rebecca L. Johnston, Helena Foley, Samual MacDonald, Olga Kondrashova, Khoa Tran, Kátia Nones, Lambros T. Koufariotis, Cameron Bean, John V. Pearson, Maciej Trzaskowski, Nicola Waddell
Software Mentions: 9
Published: over 3 years ago
10.7554/eLife.66788
An NKX2-1/ERK/WNT feedback loop modulates gastric identity and response to targeted therapy in lung adenocarcinomaCited by: 11
Author(s): Rediet Zewdu, Elnaz Mirzaei Mehrabad, Kelley Ingram, Pengshu Fang, Katherine L Gillis, Soledad A. Camolotto, Grace Orstad, Alex Jones, Michelle C. Mendoza, Benjamin T. Spike, Eric L. Snyder
Software Mentions: 7
Published: over 3 years ago
10.1186/s13059-021-02280-8
iMAP: integration of multiple single-cell datasets by adversarial paired transfer networksCited by: 25
Author(s): Dongfang Wang, Siyu Hou, Lei Zhang, Xiliang Wang, Baolin Liu, Zemin Zhang
Software Mentions: 6
Published: over 3 years ago
10.1172/jci.insight.143626
Molecular mapping of interstitial lung disease reveals a phenotypically distinct senescent basal epithelial cell populationCited by: 34
Author(s): Daryle J. DePianto, Jason A. Vander Heiden, Katrina B. Morshead, Kan Sun, Zora Modrušan, Grace Teng, Paul J. Wolters, Joseph R. Arron
Software Mentions: 5
Published: over 3 years ago
10.1186/s13059-020-02192-z
The evolution of relapse of adult T cell acute lymphoblastic leukemiaCited by: 9
Author(s): Inés Sentís, Santiago González, Eulàlia Genescà, Violeta García-Hernández, Ferran Muiños, Celia Guadalupe Morales González, Erika López-Arribillaga, Jéssica González, Lierni Fernández‐Ibarrondo, Loris Mularoni, Lluís Espinosa, Beatríz Bellosillo, Josep‐María Ribera, Anna Bigas, Abel González-Pérez, Núria López‐Bigas
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0252486
Smell compounds classification using UMAP to increase knowledge of odors and molecular structures linkagesCited by: 9
Author(s): Marylène Rugard, Thomas Jaylet, Olivier Taboureau, Anne Tromelin, Karine Audouze
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-81486-z
Chemoprotective antimalarials identified through quantitative high-throughput screening of Plasmodium blood and liver stage parasitesCited by: 12
Author(s): Dorjbal Dorjsuren, Richard T. Eastman, Kathryn J. Wicht, Daniel J. Jansen, Daniel C. Talley, Benjamin A Sigmon, Alexey Zakharov, Norma Roncal, Andrew T. Girvin, Yevgeniya Antonova‐Koch, Paul M Will, Pranav Shah, Hongmao Sun, Carleen Klumpp‐Thomas, Sachel Mok, Tomas Yeo, Stephan Meister, Juan Marugán, Leila Ross, Xin Xu, David J. Maloney, Ajit Jadhav, Bryan T. Mott, Richard J Sciotti, Elizabeth A. Winzeler, Norman C. Waters, Robert F. Campbell, Wenwei Huang, Anton Simeonov, David A. Fidock
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-019-54248-1
Functional maturation of human neural stem cells in a 3D bioengineered brain model enriched with fetal brain-derived matrixCited by: 36
Author(s): Disha Sood, Dana M. Cairns, Jayanth M. Dabbi, Charu Ramakrishnan, Karl Deisseroth, Lauren D. Black, Sabato Santaniello, David L. Kaplan
Software Mentions: 1
Published: almost 5 years ago
10.3389/fimmu.2020.01941
Automated Manufacture of Autologous CD19 CAR-T Cells for Treatment of Non-hodgkin LymphomaCited by: 52
Author(s): Zachary Jackson, Anne Roe, Ashish Sharma, Filipa Blasco Tavares Pereira Lopes, Aarthi Talla, Sarah Kleinsorge-Block, Kayla Zamborsky, Jennifer Schiavone, Shivaprasad Manjappa, Robert Schauner, Grace Lee, Ruifu Liu, Paolo Caimi, Ying Xiong, Winfried Krueger, Andrew Worden, Mike Kadan, Dina Schneider, Rimas J. Orentas, Boro Dropulić, Rafick‐Pierre Sékaly, Marcos de Lima, David N. Wald, Jane Reese
Software Mentions: 1
Published: about 4 years ago
10.3389/frai.2021.613956
Virtual Cohorts and Synthetic Data in Dementia: An Illustration of Their Potential to Advance ResearchCited by: 7
Author(s): Graciela Muñiz‐Terrera, Ofer Mendelevitch, Rodrigo Barnes, Michael D. Lesh
Software Mentions: 1
Published: over 3 years ago