Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1795-z

https://doi.org/10.1186/s13059-019-1795-z

A comparison of automatic cell identification methods for single-cell RNA sequencing data

Cited by: 361
Author(s): Tamim Abdelaal, Lieke Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel J. T. Reinders, Ahmed Mahfouz
Published: over 5 years ago

Software Mentions 12

bioconductor: CellBench

Construct Benchmarks for Single Cell Analysis Methods
Papers that mentioned: 7

bioconductor: CHETAH

Fast and accurate scRNA-seq cell type identification
Papers that mentioned: 6

bioconductor: MAST

Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668

bioconductor: MetaNeighbor

Single cell replicability analysis
Papers that mentioned: 11

bioconductor: SingleR

Reference-Based Single-Cell RNA-Seq Annotation
Papers that mentioned: 97

cran: SCINA

A Semi-Supervised Category Identification and Assignment Tool
Papers that mentioned: 5

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

pypi: Cell-BLAST

Single-cell transcriptome querying tool
Papers that mentioned: 1

pypi: DigitalCellSorter

Toolkit for analysis and identification of cell types from heterogeneous single cell RNA-seq data
Papers that mentioned: 2

pypi: MAST

MAterials Simulation Toolkit
Papers that mentioned: 668

pypi: MNN

C methods for MNN Package
Papers that mentioned: 12

pypi: scikit-learn

A set of python modules for machine learning and data mining
Papers that mentioned: 2,431