Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: SCINA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/SCINA

A Semi-Supervised Category Identification and Assignment Tool
4 versions
Latest release: over 5 years ago
490 downloads last month

Papers Mentioning SCINA 5

10.1186/s13059-020-02116-x
Integrative analyses of single-cell transcriptome and regulome using MAESTRO
Cited by: 107
Author(s): Chenfei Wang, Dongqing Sun, Xin Huang, Changxin Wan, Ziyi Li, Ya Han, Qian Qin, Jingyu Fan, Xintao Qiu, Yingtian Xie, Clifford A. Meyer, Myles Brown, Ming Tang, Henry W. Long, Tao Liu, X. Shirley Liu
Software Mentions: 15
Published: over 4 years ago
10.1186/s13059-019-1795-z
A comparison of automatic cell identification methods for single-cell RNA sequencing data
Cited by: 361
Author(s): Tamim Abdelaal, Lieke Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel J. T. Reinders, Ahmed Mahfouz
Software Mentions: 12
Published: over 5 years ago
10.1016/j.ebiom.2021.103390
AI-guided discovery of the invariant host response to viral pandemics
Cited by: 31
Author(s): Debashis Sahoo, Gajanan D. Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo, Courtney Tindle, MacKenzie Fuller, Sahar Taheri, Thomas F. Rogers, Nathan Beutler, Sydney I. Ramirez, Stephen A. Rawlings, Victor Pretorius, Davey M Smith, Dennis R. Burton, Laura E. Crotty Alexander, Jason Duran, Shane Crotty, Jennifer M. Dan, Soumita Das, Pradipta Ghosh
Software Mentions: 7
Published: over 3 years ago
10.1186/s13059-021-02281-7
scSorter: assigning cells to known cell types according to marker genes
Cited by: 43
Author(s): Hongqian Guo, Jun Li
Software Mentions: 4
Published: almost 4 years ago
10.3390/genes10070531
SCINA: Semi-Supervised Analysis of Single Cells in Silico
Cited by: 127
Author(s): Ze Zhang, Danni Luo, Xue Zhong, Jin Huk Choi, Yuanqing Ma, Stacy Wang, Elena Mahrt, Wenfei Guo, Eric Stawiski, Zora Modrušan, Somasekar Seshagiri, Payal Kapur, Gary C. Hon, James Brugarolas, Tao Wang
Software Mentions: 3
Published: over 5 years ago