Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: MetaNeighbor
https://packages.ecosyste.ms/registries/bioconductor.org/packages/MetaNeighbor
Single cell replicability analysis
1 version
Latest release: about 1 year ago
7,933 downloads total
Papers Mentioning MetaNeighbor 11
10.1186/s13059-019-1795-z
A comparison of automatic cell identification methods for single-cell RNA sequencing dataCited by: 361
Author(s): Tamim Abdelaal, Lieke Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel J. T. Reinders, Ahmed Mahfouz
Software Mentions: 12
Published: about 5 years ago
10.3389/fgene.2019.00629
Single-Cell RNA Sequencing-Based Computational Analysis to Describe Disease HeterogeneityCited by: 23
Author(s): Tao Zeng, Hao Dai
Software Mentions: 10
Published: over 5 years ago
10.1186/s13045-020-00941-y
A single-cell survey of cellular hierarchy in acute myeloid leukemiaCited by: 39
Author(s): Jinliang Wu, Yanyu Xiao, Jie Sun, Huiyu Sun, Haide Chen, Yuanyuan Zhu, Haidong Fu, Chengxuan Yu, E Weigao, Shih‐Wei Lai, Lifeng Ma, Jiaqi Li, Lijiang Fei, Mengmeng Jiang, Jingjing Wang, Fang Ye, Renying Wang, Ziyu Zhou, Guodong Zhang, Tingyue Zhang, Qiong Ding, Zou Wang, Sheng Hao, Lizhen Liu, Weiyan Zheng, Jingsong He, Weijia Huang, Yungui Wang, Jin Xie, Tiefeng Li, Tao Cheng, Xiaoping Han, He Huang, Guoji Guo
Software Mentions: 9
Published: about 4 years ago
10.12688/f1000research.18490.3
Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing dataCited by: 38
Author(s): J. Javier Díaz-Mejía, Elaine C. Meng, Alexander R. Pico, Sonya A. MacParland, Troy Ketela, Trevor J. Pugh, Gary D. Bader, John H. Morris
Software Mentions: 7
Published: about 5 years ago
10.1186/s13287-021-02354-1
Single-cell RNA sequencing of cultured human endometrial CD140b+CD146+ perivascular cells highlights the importance of in vivo microenvironmentCited by: 11
Author(s): Dandan Cao, Rachel Chan, Ernest Hung Yu Ng, Kristina Gemzell‐Danielsson, William S.B. Yeung
Software Mentions: 6
Published: over 3 years ago
10.1186/s13059-019-1764-6
BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypesCited by: 94
Author(s): Tongxin Wang, Travis Johnson, Wei Shao, Zixiao Lu, Bryan R. Helm, Jie Zhang, Kun Huang
Software Mentions: 5
Published: over 5 years ago
10.1186/s13619-020-00042-8
Mapping a mammalian adult adrenal gland hierarchy across species by microwell-seqCited by: 7
Author(s): Shih–Wei Lai, Lifeng Ma, E Weigao, Fang Ye, Haide Chen, Xiaoping Han, Guoji Guo
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0205499
CaSTLe – Classification of single cells by transfer learning: Harnessing the power of publicly available single cell RNA sequencing experiments to annotate new experimentsCited by: 84
Author(s): Yuval Lieberman, Lior Rokach, Tal Shay
Software Mentions: 4
Published: about 6 years ago
10.3389/fnmol.2018.00363
Assessing Transcriptome Quality in Patch-Seq DatasetsCited by: 33
Author(s): Shreejoy J. Tripathy, Lilah Toker, Claire Bomkamp, B. Ogan Mancarci, Manuel Belmadani, Paul Pavlidis
Software Mentions: 4
Published: about 6 years ago
10.3389/fgene.2021.679616
Integrative Single-Cell Transcriptomic Analysis of Human Fetal Thymocyte DevelopmentCited by: 5
Author(s): Yuchen Li, Weihong Zeng, Tong Li, Yi Guo, Guangyong Zheng, Xiaoyun He, Lilian Bai, Guolian Ding, Li Jin, Xinmei Liu
Software Mentions: 3
Published: over 3 years ago
10.3389/fimmu.2020.01036
Medical Treatment of Lung Cancer: Can Immune Cells Predict the Response? A Systematic ReviewCited by: 9
Author(s): Philippe Rochigneux, Alejandro J. Garcia, Brice Chanez, Anne Madroszyk, Daniel Olive, Edward B. Garon
Software Mentions: 1
Published: over 4 years ago