Projects: bioconductor: CellBench
https://packages.ecosyste.ms/registries/bioconductor.org/packages/CellBench
Construct Benchmarks for Single Cell Analysis Methods
1 version
Latest release: almost 2 years ago
2 dependent packages
7,296 downloads total
Enhanced Analysis
Educational Contributors:
[email protected]
Repository Activity:
Repository Owner:
Shian Su (user)
Bioinformatician, biostatistician and biological lifeform. Interested in R, C++ and Javascript for genomic data processing, summarisation and visualisation.
Bioinformatician, biostatistician and biological lifeform. Interested in R, C++ and Javascript for genomic data processing, summarisation and visualisation.
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+8
Academic maintainer emails
1 maintainers with academic email addresses -
+20
Educational commit emails
1 contributors with educational email addresses -
+8
Science terms in README
4 scientific terms found in README
Penalties:
-
-15
No science keywords
No scientific terms found in keywords/classifiers
Very Likely Science (100)
Papers Mentioning CellBench 7
10.1186/s13059-020-02136-7
pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing toolsCited by: 53
Author(s): Pierre-Luc Germain, Anthony Sonrel, Mark D. Robinson
Software Mentions: 21
Published: almost 5 years ago
10.1186/s13059-020-02132-x
A systematic evaluation of single-cell RNA-sequencing imputation methodsCited by: 156
Author(s): Wenpin Hou, Zhicheng Ji, Hongkai Ji, Stephanie Hicks
Software Mentions: 15
Published: almost 5 years ago
10.1186/s13059-019-1766-4
scAlign: a tool for alignment, integration, and rare cell identification from scRNA-seq dataCited by: 74
Author(s): Nelson Johansen, Gerald Quon
Software Mentions: 12
Published: almost 6 years ago
10.1186/s13059-019-1795-z
A comparison of automatic cell identification methods for single-cell RNA sequencing dataCited by: 361
Author(s): Tamim Abdelaal, Lieke Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel J. T. Reinders, Ahmed Mahfouz
Software Mentions: 12
Published: almost 6 years ago
10.1093/bioinformatics/btz889
<i>CellBench</i>: <i>R/Bioconductor</i> software for comparing single-cell RNA-seq analysis methodsCited by: 17
Author(s): Shian Su, Luyi Tian, Xueyi Dong, Peter Hickey, Saskia Freytag, Matthew E. Ritchie
Software Mentions: 11
Published: over 5 years ago
10.1371/journal.pcbi.1007939
Iterative point set registration for aligning scRNA-seq dataCited by: 3
Author(s): Amir Alavi, Ziv Bar‐Joseph
Software Mentions: 6
Published: over 4 years ago
10.7717/peerj.12087
SC-JNMF: single-cell clustering integrating multiple quantification methods based on joint non-negative matrix factorizationCited by: 6
Author(s): Mikio Shiga, Shigeto Seno, Makoto Onizuka, Hideo Matsuda
Software Mentions: 4
Published: almost 4 years ago