Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: SOUP

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/SOUP

Stochastic Ordering Using Permutations (and Pairwise Comparisons)
1 version
Latest release: over 9 years ago
0 downloads

Papers Mentioning SOUP 6

10.1186/s12859-021-04210-8

Contrastive self-supervised clustering of scRNA-seq data
Cited by: 28
Author(s): Madalina Ciortan, Matthieu Defrance
Software Mentions: 13
Published: over 3 years ago

Accuracy, robustness and scalability of dimensionality reduction methods for single-cell RNA-seq analysis
Cited by: 123
Author(s): Shuang Sun, Jiaqiang Zhu, Ying Ma, Xiang Zhou
Software Mentions: 13
Published: almost 5 years ago

10.1371/journal.pcbi.1009064

coupleCoC+: An information-theoretic co-clustering-based transfer learning framework for the integrative analysis of single-cell genomic data
Cited by: 7
Author(s): Pengcheng Zeng, Zhixiang Lin
Software Mentions: 9
Published: over 3 years ago

10.3389/fgene.2020.00295

Single-Cell Transcriptome Data Clustering via Multinomial Modeling and Adaptive Fuzzy K-Means Algorithm
Cited by: 13
Author(s): Liang Chen, Weinan Wang, Yuyao Zhai, Minghua Deng
Software Mentions: 8
Published: over 4 years ago

10.1186/s41205-016-0009-5

Maintaining safety and efficacy for 3D printing in medicine
Cited by: 88
Author(s): Andy Christensen, Frank J. Rybicki
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pbio.0020162

Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones
Cited by: 306
Author(s): Tadashi Imanishi, Takeshi Itoh, Yutaka Suzuki, Claire O’Donovan, Satoshi Fukuchi, Kanako O. Koyanagi, Roberto A. Barrero, Takuro Tamura, Yumi Yamaguchi-Kabata, Motohiko Tanino, Kei Yura, Satoru Miyazaki, Kazuho Ikeo, Keiichi Homma, Arek Kasprzyk, Tetsuo Nishikawa, Mika Hirakawa, Jean Thierry‐Mieg, Danielle Thierry-Mieg, Jennifer Ashurst, Jia Lee, Mitsuteru Nakao, Michael A. Thomas, Nicola Mulder, Youla Karavidopoulou, Ling Jin, Sang Soo Kim, Tomohiro Yasuda, Boris Lenhard, É. Éveno, Yoshiyuki Suzuki, Chisato Yamasaki, Jun‐ichi Takeda, Craig A. Gough, Phillip Hilton, Yasuyuki Fujii, Hiroaki Sakai, Susumu Tanaka, Clara Amid, M. Bellgard, Maria de Fátima Bonaldo, Hidemasa Bono, Susan K. Bromberg, Anthony J. Brookes, Elspeth A. Bruford, Piero Carninci, Claude Chelala, C. Couillault, Sandro J. de Souza, Marie-Anne Debily, Marie‐Dominique Devignes, Inna Dubchak, Toshinori Endo, Anne Estreicher, Eduardo Eyras, Kaoru Fukami-Kobayashi, Gopal Gopinath, Esther Graudens, Yoonsoo Hahn, Michael Han, Ze‐Guang Han, Kousuke Hanada, Hideki Hanaoka, Erimi Harada, Katsuyuki Hashimoto, Ursula Hinz, Momoki Hirai, Teruyoshi Hishiki, Ian Hopkinson, Sandrine Imbeaud, Hidetoshi Inoko, Alexander Kanapin, Yayoi Kaneko, Takeya Kasukawa, Janet Kelso, Paul J. Kersey, Reiko Kikuno, Kouichi Kimura, Bernhard Korn, Vladimir Kuryshev, Izabela Makałowska, Takashi Makino, Shuhei Mano, Régine Mariage‐Samson, Jun Mashima, Hideo Matsuda, Hans‐Werner Mewes, Shinsei Minoshima, Keiichi Nagai, Hideki Nagasaki, Naoki Nagata, Rajni Nigam, Osamu Ogasawara, Osamu Ohara, Masafumi Ohtsubo, Norihiro Okada, Toshihisa Okido, Satoshi Oota, Motonori Ota, Toshio Ota, Tetsuji Otsuki, Dominique Piatier‐Tonneau, Annemarie Poustka, Shuangxi Ren, Naruya Saitou, Katsunaga Sakai, Shigetaka Sakamoto, Ryuichi Sakate, Ingo Schupp, Florence Servant, Stephen T. Sherry, Rie Shiba, Nobuyoshi Shimizu, Mary Shimoyama, Andrew Simpson, Bento Soares, Charles A. Steward, Makiko Suwa, Mami Suzuki, Aiko Takahashi, Gen Tamiya, Hiroshi Tanaka, Todd D. Taylor, Joseph D. Terwilliger, Per Unneberg, Vamsi Veeramachaneni, Shinya Watanabe, Laurens G. Wilming, Norikazu Yasuda, Hyang–Sook Yoo, Marvin Stodolsky, Wojciech Makałowski, Mitiko Gō, Kenta Nakai, Toshihisa Takagi, Minoru Kanehisa, Yoshiyuki Sakaki, John Quackenbush, Yasushi Okazaki, Yoshihide Hayashizaki, Winston Hide, Ranajit Chakraborty, Ken Nishikawa, Hideaki Sugawara, Yoshio Tateno, Chen Zhu, Michio Oishi, Peter J. Tonellato, Rolf Apweiler, Kousaku Okubo, Lukas Wagner, Stefan Wiemann, Robert L. Strausberg, Takao Isogai, Charles Auffray, Nobuo Nomura, Takashi Gojobori, Sumio Sugano
Software Mentions: 1
Published: over 20 years ago