Ecosyste.ms: Papers

bioconductor: SIMLR

Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)
Papers that mentioned: 40

cran: desc

Manipulate DESCRIPTION Files
Papers that mentioned: 2

cran: RaceID

Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Papers that mentioned: 25

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

cran: SOUP

Stochastic Ordering Using Permutations (and Pairwise Comparisons)
Papers that mentioned: 6

pypi: contrastive

Python library for performing unsupervised learning (e.g. PCA) in contrastive settings, where one is interested in finding directions and patterns that exist one dataset, but not the other
Papers that mentioned: 1

pypi: desc

Deep Embedded Single-cell RNA-seq Clustering
Papers that mentioned: 2

pypi: pytorch

Papers that mentioned: 71

pypi: scanpy

Single-Cell Analysis in Python.
Papers that mentioned: 68

pypi: scedar

Single-cell exploratory data analysis for RNA-Seq
Papers that mentioned: 2

pypi: scikit-learn

A set of python modules for machine learning and data mining
Papers that mentioned: 2,431

pypi: scvi

Single-cell Variational Inference
Papers that mentioned: 1

pypi: SIMLR

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning
Papers that mentioned: 40