Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12967-021-03076-x

https://doi.org/10.1186/s12967-021-03076-x

A novel immune subtype classification of ER-positive, PR-negative and HER2-negative breast cancer based on the genomic and transcriptomic landscape

Cited by: 4
Author(s): Peiling Xie, Rui An, Shibo Yu, Jing He, Huimin Zhang
Published: about 3 years ago

Software Mentions 8

bioconductor: ConsensusClusterPlus
ConsensusClusterPlus
Papers that mentioned: 313
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
bioconductor: maftools
Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288
bioconductor: monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Papers that mentioned: 60
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
cran: clusterRepro
Reproducibility of Gene Expression Clusters
Papers that mentioned: 13
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
pypi: monocle
An async programming framework with a blocking look-alike syntax
Papers that mentioned: 60