Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s42003-020-01625-6

https://doi.org/10.1038/s42003-020-01625-6

Mapping the immune environment in clear cell renal carcinoma by single-cell genomics

Cited by: 103
Author(s): Nicholas Borcherding, Ajaykumar Vishwakarma, Andrew P. Voigt, Andrew M. Bellizzi, Jacob Kaplan, Kenneth G. Nepple, Aliasger K. Salem, Russell W. Jenkins, Yousef Zakharia, Weizhou Zhang
Published: almost 4 years ago

Software Mentions 14

bioconductor: flowCore
flowCore: Basic structures for flow cytometry data
Papers that mentioned: 109
bioconductor: scDblFinder
scDblFinder
Papers that mentioned: 7
bioconductor: scRepertoire
A toolkit for single-cell immune receptor profiling
Papers that mentioned: 3
bioconductor: SingleR
Reference-Based Single-Cell RNA-Seq Annotation
Papers that mentioned: 97
bioconductor: slingshot
Tools for ordering single-cell sequencing
Papers that mentioned: 8
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: parsnip
A Common API to Modeling and Analysis Functions
Papers that mentioned: 2
cran: rsample
General Resampling Infrastructure
Papers that mentioned: 3
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: survival
Survival Analysis
Papers that mentioned: 1,690
cran: tidymodels
Easily Install and Load the 'Tidymodels' Packages
Papers that mentioned: 7
pypi: parsnip
Library for parsing and manipulating Python code
Papers that mentioned: 2
pypi: slingshot
Index Migration for ElasticSearch
Papers that mentioned: 8
pypi: survival
Add static script_dir() method to Path
Papers that mentioned: 1,690