Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: scDblFinder

https://packages.ecosyste.ms/registries/bioconductor.org/packages/scDblFinder

scDblFinder
2 versions
Latest release: 9 months ago
1 dependent package
39,156 downloads total

Papers Mentioning scDblFinder 7

10.1186/s13059-020-02136-7

pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools
Cited by: 53
Author(s): Pierre-Luc Germain, Anthony Sonrel, Mark D. Robinson
Software Mentions: 21
Published: almost 4 years ago

10.1038/s42003-020-01625-6

Mapping the immune environment in clear cell renal carcinoma by single-cell genomics
Cited by: 103
Author(s): Nicholas Borcherding, Ajaykumar Vishwakarma, Andrew P. Voigt, Andrew M. Bellizzi, Jacob Kaplan, Kenneth G. Nepple, Aliasger K. Salem, Russell W. Jenkins, Yousef Zakharia, Weizhou Zhang
Software Mentions: 14
Published: over 3 years ago

10.26508/lsa.202001004

CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data
Cited by: 21
Author(s): Almut Luetge, Joanna Zyprych-Walczak, Urszula Brykczynska Kunzmann, Helena L. Crowell, Daniela Calini, Dheeraj Malhotra, Charlotte Soneson, Mark D. Robinson
Software Mentions: 12
Published: over 3 years ago

10.1093/gigascience/giab062

Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design
Cited by: 16
Author(s): Lukas M. Weber, Ariel A. Hippen, Peter Hickey, Kristofer C. Berrett, Jason Gertz, Jennifer A. Doherty, Casey S. Greene, Stephanie C. Hicks
Software Mentions: 8
Published: almost 3 years ago

10.1002/ctm2.422

Single‐cell analyses reveal suppressive tumor microenvironment of human colorectal cancer
Cited by: 37
Author(s): Mei Yan, Weiwei Xiao, Hao Hu, Guan-Ming Lu, Lingdan Chen, Zhun Sun, Mengdie Lü, Wenhui Ma, Ting Jiang, Yuanhong Gao, LiRen Li, Gong Chen, Zifeng Wang, Hanjie Li, Duojiao Wu, Ping‐Hong Zhou, Qibin Leng, Guangshuai Jia
Software Mentions: 8
Published: about 3 years ago

10.3389/fgene.2021.637322

Leveraging Single-Cell RNA-seq Data to Uncover the Association Between Cell Type and Chronic Liver Diseases
Cited by: 4
Author(s): Xiangyu Ye, Jian Wei, Ming Yue, Yan Wang, Hongbo Chen, Yongfeng Zhang, Yifan Wang, Meiling Zhang, Peng Huang, Rongbin Yu
Software Mentions: 3
Published: over 3 years ago

10.7554/eLife.61973

Improving oligo-conjugated antibody signal in multimodal single-cell analysis
Cited by: 27
Author(s): Terkild Brink Buus, Alberto Herrera, Ellie Ivanova, Eleni P. Mimitou, Anthony Cheng, Ramin S. Herati, Thales Papagiannakopoulos, Peter Smibert, Niels Ødum, Sergei B. Koralov
Software Mentions: 3
Published: over 3 years ago