Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giab062

https://doi.org/10.1093/gigascience/giab062

Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design

Cited by: 16
Author(s): Lukas M. Weber, Ariel A. Hippen, Peter Hickey, Kristofer C. Berrett, Jason Gertz, Jennifer A. Doherty, Casey S. Greene, Stephanie C. Hicks
Published: about 3 years ago

Software Mentions 8

bioconductor: scDblFinder

scDblFinder
Papers that mentioned: 7

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

pypi: awk

A library to provide advanced awk-like functionalities for file manipulation in Python.
Papers that mentioned: 80

pypi: cellSNP

cellSNP - Analysis of expressed alleles in single cells
Papers that mentioned: 3

pypi: GMM-Demux

A multiplet removal tool for processing cell hashing data
Papers that mentioned: 2

pypi: scSplit

Genotype-free demultiplexing of pooled single-cell RNA-Seq
Papers that mentioned: 2

pypi: sed

Streaming editor toolkit
Papers that mentioned: 36

pypi: shell

A better way to run shell commands in Python.
Papers that mentioned: 207